Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm10275-202ENSMUST00000168697 495 ntBASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Gm10275-201ENSMUST00000092620 635 ntBASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Gm28182-201ENSMUST00000188354 2477 ntBASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Aff2-201ENSMUST00000033532 4523 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Prpf40aQ9R1C7 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Larp4b-202ENSMUST00000188211 5610 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Rprd1b-202ENSMUST00000103123 4504 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 AC166574.6-201ENSMUST00000227889 1806 ntBASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Inhba-201ENSMUST00000042603 6390 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Disp1-205ENSMUST00000195372 4901 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Mfsd6-201ENSMUST00000087701 3493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Zfp628-201ENSMUST00000116354 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Skida1-202ENSMUST00000091420 4376 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Mir449b-201ENSMUST00000104833 80 ntBASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 A930033H14Rik-201ENSMUST00000170048 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Gm7774-201ENSMUST00000200064 533 ntBASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 AC123645.1-201ENSMUST00000228469 605 ntBASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 B4galnt1-201ENSMUST00000006914 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Prpf40aQ9R1C7 Gm45630-201ENSMUST00000210243 1911 ntBASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Tmem8b-202ENSMUST00000107865 4775 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Slc9a3-201ENSMUST00000036208 2490 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Vash1-201ENSMUST00000021681 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Fmnl2-205ENSMUST00000155586 3939 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
Prpf40aQ9R1C7 Canx-205ENSMUST00000179865 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Ubc-203ENSMUST00000156249 2581 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Amhr2-201ENSMUST00000023809 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Gm13015-201ENSMUST00000118674 204 ntBASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Pde4dip-205ENSMUST00000168438 8264 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Prpf40aQ9R1C7 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Gdf10-201ENSMUST00000168727 5210 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Prpf40aQ9R1C7 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms