Protein–RNA interactions for Protein: Q6PDQ2

Chd4, Chromodomain-helicase-DNA-binding protein 4, mousemouse

Known RBP Predictions only

Length 1,915 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd4Q6PDQ2 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Gm12050-201ENSMUST00000127483 615 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Syvn1-201ENSMUST00000025723 2780 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Txnrd1-206ENSMUST00000219442 3531 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Palm-201ENSMUST00000046945 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Hes2-201ENSMUST00000030782 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Acox3-204ENSMUST00000114238 2825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Chd4Q6PDQ2 Rhox2b-201ENSMUST00000115191 799 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gm5370-201ENSMUST00000187187 574 ntBASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Dnd1-ps-201ENSMUST00000196992 964 ntBASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Tldc2-201ENSMUST00000099140 608 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gm9755-201ENSMUST00000032981 1356 ntBASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gpr19-208ENSMUST00000165392 1643 ntTSL 3 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gpr19-202ENSMUST00000066107 1647 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Olfr707-201ENSMUST00000088687 924 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Olfr1532-ps1-201ENSMUST00000098140 924 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Foxi2-201ENSMUST00000060356 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Ccdc134-201ENSMUST00000089174 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Ppp1r3d-201ENSMUST00000058678 3267 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Chd4Q6PDQ2 Psmc3-203ENSMUST00000111441 1419 ntTSL 5 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Nupl1-207ENSMUST00000225311 2475 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm45760-201ENSMUST00000212190 1782 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm26618-201ENSMUST00000181123 497 ntTSL 2 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm26927-201ENSMUST00000182385 965 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Rassf8-202ENSMUST00000058538 1131 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Capg-201ENSMUST00000071044 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Rn7sk-201ENSMUST00000083103 331 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm26315-201ENSMUST00000083890 321 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Ddx27-201ENSMUST00000018143 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Awat2-201ENSMUST00000033567 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Mbp-203ENSMUST00000075372 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Scg2-201ENSMUST00000049972 2515 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm10327-201ENSMUST00000105222 1002 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Hax1-207ENSMUST00000198782 855 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Gm9257-201ENSMUST00000221254 232 ntBASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC18.1■□□□□ 0.49
Chd4Q6PDQ2 Nab1-204ENSMUST00000170269 1371 ntTSL 5 BASIC18.09■□□□□ 0.49
Chd4Q6PDQ2 Vwa3b-202ENSMUST00000067178 1769 ntAPPRIS P5 TSL 2 BASIC18.09■□□□□ 0.49
Chd4Q6PDQ2 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd4Q6PDQ2 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Chd4Q6PDQ2 Gm38197-201ENSMUST00000192320 2122 ntBASIC18.09■□□□□ 0.49
Chd4Q6PDQ2 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 62.6 ms