Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Cyp4f37-201ENSMUST00000077639 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Scn4aQ9ER60 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Ccl27a-203ENSMUST00000108033 428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 AC124457.1-201ENSMUST00000198845 120 ntBASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Gm19963-201ENSMUST00000208413 1255 ntBASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Gm7207-201ENSMUST00000211575 1067 ntBASIC18.86■□□□□ 0.61
Scn4aQ9ER60 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Hipk4-202ENSMUST00000108353 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Gm44999-201ENSMUST00000207456 1493 ntBASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Arl6ip5-201ENSMUST00000044681 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Tmem219-202ENSMUST00000119781 1118 ntTSL 5 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Rassf4-202ENSMUST00000203029 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Rps18-ps3-201ENSMUST00000080443 456 ntBASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Scn4aQ9ER60 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Mir698-201ENSMUST00000102164 109 ntBASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Cd300ld2-202ENSMUST00000106578 918 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm12816-201ENSMUST00000118069 1212 ntBASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm11340-201ENSMUST00000119226 412 ntBASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm28693-202ENSMUST00000190758 331 ntBASIC18.85■□□□□ 0.61
Scn4aQ9ER60 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Gm5879-201ENSMUST00000089501 1209 ntBASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 N6amt1-203ENSMUST00000118310 1700 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Scn4aQ9ER60 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Gm15547-201ENSMUST00000122152 333 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Nop56-204ENSMUST00000136621 868 ntTSL 5 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Gm38210-201ENSMUST00000191944 809 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 AC154176.1-201ENSMUST00000225897 220 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Gm4366-201ENSMUST00000201488 1342 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Gm13045-201ENSMUST00000119019 712 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Scn4aQ9ER60 AC154849.4-201ENSMUST00000224868 365 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 AC069562.3-201ENSMUST00000225387 587 ntBASIC18.84■□□□□ 0.61
Scn4aQ9ER60 Ppt2-210ENSMUST00000171376 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 Gm14379-201ENSMUST00000128858 1878 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Scn4aQ9ER60 AC121801.1-201ENSMUST00000225363 1899 ntBASIC18.83■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms