Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Aptx-202ENSMUST00000068125 5383 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Elac1-201ENSMUST00000041138 4971 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Aqp10-ps-201ENSMUST00000199555 611 ntBASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Cenpm-201ENSMUST00000089155 1109 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Gm13517-201ENSMUST00000120782 1495 ntBASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Pax2-201ENSMUST00000004340 3095 ntTSL 5 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Alx1-205ENSMUST00000218282 2012 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Gm45667-201ENSMUST00000210380 1316 ntBASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Trim9Q8C7M3 Rbbp5-206ENSMUST00000190825 2456 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Cep295nl-202ENSMUST00000168100 1602 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Mypn-202ENSMUST00000218978 1833 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Sh3bp5-202ENSMUST00000100730 2633 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Arid3a-203ENSMUST00000105377 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Gm24543-201ENSMUST00000103867 82 ntBASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 3110053B16Rik-204ENSMUST00000145605 575 ntBASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Vav1-203ENSMUST00000112870 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Parg-202ENSMUST00000163350 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Tspan12-202ENSMUST00000120965 2157 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Pbx2-203ENSMUST00000173328 1990 ntTSL 2 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Gm15889-202ENSMUST00000212669 2443 ntBASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
Trim9Q8C7M3 Gm44291-201ENSMUST00000203102 2865 ntBASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Tial1-203ENSMUST00000106228 2835 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Sirpa-202ENSMUST00000099113 3342 ntTSL 3 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Fam214b-202ENSMUST00000107956 3107 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Gm14701-201ENSMUST00000117156 348 ntBASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 1600002D24Rik-202ENSMUST00000136744 1854 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
Trim9Q8C7M3 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Mpl-203ENSMUST00000106375 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Wdfy3-206ENSMUST00000174698 3858 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
Trim9Q8C7M3 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 40.1 ms