Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 AC008735.5-201ENST00000623544 497 ntBASIC16.82■□□□□ 0.28
SHMT2P34897 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.82■□□□□ 0.28
SHMT2P34897 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
SHMT2P34897 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.82■□□□□ 0.28
SHMT2P34897 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHMT2P34897 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.82■□□□□ 0.28
SHMT2P34897 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.81■□□□□ 0.28
SHMT2P34897 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
SHMT2P34897 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 ACTG1P4-201ENST00000425123 1122 ntBASIC16.81■□□□□ 0.28
SHMT2P34897 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.81■□□□□ 0.28
SHMT2P34897 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 AC079776.4-201ENST00000511039 504 ntBASIC16.81■□□□□ 0.28
SHMT2P34897 RNA5SP419-201ENST00000515908 135 ntBASIC16.81■□□□□ 0.28
SHMT2P34897 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.81■□□□□ 0.28
SHMT2P34897 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.81■□□□□ 0.28
SHMT2P34897 MIR7706-201ENST00000613747 67 ntBASIC16.81■□□□□ 0.28
SHMT2P34897 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.81■□□□□ 0.28
SHMT2P34897 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SHMT2P34897 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 AL135999.2-201ENST00000622438 1686 ntBASIC16.81■□□□□ 0.28
SHMT2P34897 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
SHMT2P34897 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
SHMT2P34897 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHMT2P34897 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.8■□□□□ 0.28
SHMT2P34897 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.8■□□□□ 0.28
SHMT2P34897 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SHMT2P34897 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHMT2P34897 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.8■□□□□ 0.28
SHMT2P34897 AC105339.3-201ENST00000560043 636 ntBASIC16.8■□□□□ 0.28
SHMT2P34897 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
SHMT2P34897 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SHMT2P34897 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SHMT2P34897 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.8■□□□□ 0.28
SHMT2P34897 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
SHMT2P34897 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.8■□□□□ 0.28
SHMT2P34897 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SHMT2P34897 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SHMT2P34897 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.8■□□□□ 0.28
SHMT2P34897 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SHMT2P34897 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.79■□□□□ 0.28
SHMT2P34897 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SHMT2P34897 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.79■□□□□ 0.28
SHMT2P34897 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.79■□□□□ 0.28
SHMT2P34897 LINC00982-205ENST00000420957 435 ntBASIC16.79■□□□□ 0.28
SHMT2P34897 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.79■□□□□ 0.28
SHMT2P34897 AL139424.1-201ENST00000607572 797 ntBASIC16.79■□□□□ 0.28
SHMT2P34897 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.79■□□□□ 0.28
SHMT2P34897 MIR1199-201ENST00000621445 119 ntBASIC16.79■□□□□ 0.28
SHMT2P34897 AC004706.3-202ENST00000621574 984 ntBASIC16.79■□□□□ 0.28
SHMT2P34897 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms