Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm26867-201ENSMUST00000180963 3615 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Tmem254b-202ENSMUST00000100806 1108 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Tmem254a-201ENSMUST00000100811 1108 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Ngb-202ENSMUST00000110176 908 ntTSL 3 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 H60b-202ENSMUST00000131558 1080 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 AC126253.1-201ENSMUST00000227974 824 ntBASIC11.93□□□□□ -0.5
Col6a4A2AX52 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Per1-203ENSMUST00000102605 4537 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm42632-201ENSMUST00000201707 2411 ntBASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm15317-201ENSMUST00000129569 699 ntTSL 3 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm6944-201ENSMUST00000182449 1006 ntBASIC11.93□□□□□ -0.5
Col6a4A2AX52 Fam24a-203ENSMUST00000207784 600 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Mdk-201ENSMUST00000028672 1054 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Tex13c2-201ENSMUST00000197237 1834 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC11.93□□□□□ -0.5
Col6a4A2AX52 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Syncrip-209ENSMUST00000174361 1767 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 1700037C18Rik-205ENSMUST00000177323 915 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 AC153527.1-201ENSMUST00000220412 602 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Trib2-204ENSMUST00000221518 1192 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Lyzl4-201ENSMUST00000077706 996 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Terf1-203ENSMUST00000188371 2268 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm10516-201ENSMUST00000180598 2615 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Arhgef2-223ENSMUST00000176804 3086 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm22018-201ENSMUST00000104357 131 ntBASIC11.92□□□□□ -0.5
Col6a4A2AX52 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm13350-201ENSMUST00000120519 479 ntBASIC11.92□□□□□ -0.5
Col6a4A2AX52 Grp-202ENSMUST00000173530 617 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Mir8109-201ENSMUST00000184375 117 ntBASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm28380-201ENSMUST00000188800 385 ntTSL 5 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 AC154806.6-201ENSMUST00000228192 202 ntBASIC11.92□□□□□ -0.5
Col6a4A2AX52 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Rasal3-201ENSMUST00000063824 3681 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Cobl-201ENSMUST00000046755 5615 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col6a4A2AX52 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Pelp1-202ENSMUST00000135148 562 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col6a4A2AX52 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC11.91□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms