Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Gm6916-202ENSMUST00000205523 195 ntBASIC17.42■□□□□ 0.38
Trim27Q62158 AC131690.1-201ENSMUST00000218406 374 ntBASIC17.42■□□□□ 0.38
Trim27Q62158 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Map2k6-202ENSMUST00000100260 2088 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Trim27Q62158 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Ilvbl-201ENSMUST00000105384 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Klc2-203ENSMUST00000113728 2838 ntTSL 5 BASIC17.42■□□□□ 0.38
Trim27Q62158 Tmem39a-214ENSMUST00000171687 2667 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Trim27Q62158 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Trim27Q62158 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Tppp3-203ENSMUST00000177126 1396 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
Trim27Q62158 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.41■□□□□ 0.38
Trim27Q62158 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Gm28729-201ENSMUST00000190704 1964 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Trim27Q62158 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Trim27Q62158 Gm8410-201ENSMUST00000117225 605 ntBASIC17.41■□□□□ 0.38
Trim27Q62158 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC17.41■□□□□ 0.38
Trim27Q62158 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Trim27Q62158 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC17.41■□□□□ 0.38
Trim27Q62158 Arpc1b-201ENSMUST00000085679 3105 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Cpne6-202ENSMUST00000163767 2004 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Trim27Q62158 6530402F18Rik-203ENSMUST00000155949 4301 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trim27Q62158 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Abcg8-202ENSMUST00000170725 2415 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Atpaf2-201ENSMUST00000108721 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim27Q62158 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Slfn2-201ENSMUST00000038038 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trim27Q62158 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Fam53b-205ENSMUST00000106166 1270 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Trim27Q62158 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
Trim27Q62158 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Gm22175-201ENSMUST00000175007 78 ntBASIC17.4■□□□□ 0.38
Trim27Q62158 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC17.4■□□□□ 0.38
Trim27Q62158 Gm42787-201ENSMUST00000200879 1164 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Slc52a3-204ENSMUST00000109861 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Gm43399-201ENSMUST00000202546 2374 ntBASIC17.4■□□□□ 0.38
Trim27Q62158 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Dlg1-201ENSMUST00000023454 3725 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Ska1-201ENSMUST00000040188 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC17.4■□□□□ 0.38
Trim27Q62158 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trim27Q62158 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim27Q62158 1500015A07Rik-201ENSMUST00000184181 1865 ntBASIC17.39■□□□□ 0.38
Trim27Q62158 Rhoj-201ENSMUST00000055390 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Trim27Q62158 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Vasp-201ENSMUST00000032561 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Sbds-201ENSMUST00000026387 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC17.39■□□□□ 0.37
Trim27Q62158 Gm13616-201ENSMUST00000120600 222 ntBASIC17.39■□□□□ 0.37
Trim27Q62158 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC17.39■□□□□ 0.37
Trim27Q62158 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
Trim27Q62158 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 CT030704.2-201ENSMUST00000228887 494 ntBASIC17.39■□□□□ 0.37
Trim27Q62158 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Ucn-201ENSMUST00000043475 504 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trim27Q62158 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Trim27Q62158 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trim27Q62158 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Serp1-201ENSMUST00000029385 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Spns1-201ENSMUST00000032994 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trim27Q62158 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trim27Q62158 AC166491.1-201ENSMUST00000227053 2308 ntBASIC17.38■□□□□ 0.37
Trim27Q62158 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 40.4 ms