Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Scube1-201ENSMUST00000016907 3991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Oxtr-201ENSMUST00000053306 4704 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Trim9Q8C7M3 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Tmub2-205ENSMUST00000156326 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Syngr1-201ENSMUST00000009727 4180 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Ubn1-201ENSMUST00000052449 6455 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm15440-201ENSMUST00000110042 1231 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm9719-201ENSMUST00000162765 543 ntBASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Hist1h3h-201ENSMUST00000188775 411 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Hist1h3i-201ENSMUST00000189457 411 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm43575-201ENSMUST00000196420 516 ntBASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gm5312-201ENSMUST00000203728 547 ntBASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Fam122b-203ENSMUST00000114841 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Gata2-201ENSMUST00000015197 3571 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
Trim9Q8C7M3 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Prn-201ENSMUST00000124100 2132 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Stk16-201ENSMUST00000027401 2876 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Sphk2-201ENSMUST00000072836 2968 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Pef1-202ENSMUST00000118199 1915 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Rnd1-203ENSMUST00000120997 856 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Kif16bos-201ENSMUST00000124774 495 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Gm10253-201ENSMUST00000194270 940 ntBASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Gm5779-201ENSMUST00000218467 910 ntBASIC15.71■□□□□ 0.11
Trim9Q8C7M3 AC140397.2-201ENSMUST00000224213 834 ntBASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Tmem242-201ENSMUST00000005053 948 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Gm8396-201ENSMUST00000057361 823 ntBASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Lamc1-201ENSMUST00000027752 7622 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Bet1l-201ENSMUST00000026557 2268 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Cnot7-201ENSMUST00000034012 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Tmem30b-201ENSMUST00000042975 2991 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
Trim9Q8C7M3 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Rbbp7-201ENSMUST00000033720 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Dcp1b-202ENSMUST00000112777 3313 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Trim15-201ENSMUST00000025329 1843 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
Trim9Q8C7M3 Snx22-201ENSMUST00000044711 2543 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Chit1-201ENSMUST00000086475 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Nsd3-211ENSMUST00000155861 2834 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Nabp1-202ENSMUST00000185534 708 ntTSL 2 BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Plxdc1-203ENSMUST00000107565 2439 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Zfp57-201ENSMUST00000069250 1749 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Haus5-201ENSMUST00000019697 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Cuedc2-201ENSMUST00000051234 1833 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Espn-220ENSMUST00000207676 4618 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Smarce1-201ENSMUST00000103133 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Trim9Q8C7M3 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Trim9Q8C7M3 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms