Protein–RNA interactions for Protein: Q9EPU4

Cpsf1, Cleavage and polyadenylation specificity factor subunit 1, mousemouse

Known RBP Predictions only

Length 1,441 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf1Q9EPU4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC30.97■■■□□ 2.55
Cpsf1Q9EPU4 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
Cpsf1Q9EPU4 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Gm15546-201ENSMUST00000122095 826 ntBASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Nsd1-203ENSMUST00000224156 1149 ntBASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Psmd7-201ENSMUST00000044106 1581 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
Cpsf1Q9EPU4 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
Cpsf1Q9EPU4 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC30.95■■■□□ 2.54
Cpsf1Q9EPU4 Gm6934-201ENSMUST00000194780 1905 ntBASIC30.95■■■□□ 2.54
Cpsf1Q9EPU4 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
Cpsf1Q9EPU4 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Cpsf1Q9EPU4 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
Cpsf1Q9EPU4 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
Cpsf1Q9EPU4 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC30.94■■■□□ 2.54
Cpsf1Q9EPU4 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
Cpsf1Q9EPU4 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
Cpsf1Q9EPU4 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cpsf1Q9EPU4 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC30.92■■■□□ 2.54
Cpsf1Q9EPU4 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
Cpsf1Q9EPU4 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
Cpsf1Q9EPU4 Nsd1-206ENSMUST00000224918 1001 ntBASIC30.91■■■□□ 2.54
Cpsf1Q9EPU4 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cpsf1Q9EPU4 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cpsf1Q9EPU4 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC30.91■■■□□ 2.54
Cpsf1Q9EPU4 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC30.9■■■□□ 2.54
Cpsf1Q9EPU4 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
Cpsf1Q9EPU4 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Cpsf1Q9EPU4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC30.9■■■□□ 2.54
Cpsf1Q9EPU4 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
Cpsf1Q9EPU4 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC30.89■■■□□ 2.53
Cpsf1Q9EPU4 Henmt1-201ENSMUST00000059946 1998 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.53
Cpsf1Q9EPU4 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC30.88■■■□□ 2.53
Cpsf1Q9EPU4 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
Cpsf1Q9EPU4 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC30.88■■■□□ 2.53
Cpsf1Q9EPU4 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
Cpsf1Q9EPU4 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
Cpsf1Q9EPU4 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
Cpsf1Q9EPU4 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC30.86■■■□□ 2.53
Cpsf1Q9EPU4 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC30.86■■■□□ 2.53
Cpsf1Q9EPU4 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Cpsf1Q9EPU4 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
Cpsf1Q9EPU4 Tifa-202ENSMUST00000163775 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
Cpsf1Q9EPU4 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
Cpsf1Q9EPU4 Gm11614-201ENSMUST00000137598 736 ntTSL 5 BASIC30.84■■■□□ 2.53
Cpsf1Q9EPU4 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC30.84■■■□□ 2.53
Cpsf1Q9EPU4 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
Cpsf1Q9EPU4 Gm22567-201ENSMUST00000175542 342 ntBASIC30.83■■■□□ 2.53
Cpsf1Q9EPU4 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC30.83■■■□□ 2.53
Cpsf1Q9EPU4 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.53
Cpsf1Q9EPU4 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC30.82■■■□□ 2.52
Cpsf1Q9EPU4 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Cpsf1Q9EPU4 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
Cpsf1Q9EPU4 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
Cpsf1Q9EPU4 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC30.81■■■□□ 2.52
Cpsf1Q9EPU4 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
Cpsf1Q9EPU4 4933408J17Rik-201ENSMUST00000181835 1859 ntTSL 2 BASIC30.79■■■□□ 2.52
Cpsf1Q9EPU4 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC30.79■■■□□ 2.52
Cpsf1Q9EPU4 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
Cpsf1Q9EPU4 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
Cpsf1Q9EPU4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
Cpsf1Q9EPU4 Spata2-202ENSMUST00000109211 1531 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
Cpsf1Q9EPU4 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
Cpsf1Q9EPU4 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC30.78■■■□□ 2.52
Cpsf1Q9EPU4 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
Cpsf1Q9EPU4 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC30.77■■■□□ 2.52
Cpsf1Q9EPU4 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
Cpsf1Q9EPU4 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Cpsf1Q9EPU4 Mrfap1-201ENSMUST00000068795 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.52
Cpsf1Q9EPU4 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Cpsf1Q9EPU4 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
Cpsf1Q9EPU4 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
Cpsf1Q9EPU4 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC30.75■■■□□ 2.51
Cpsf1Q9EPU4 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
Cpsf1Q9EPU4 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC30.74■■■□□ 2.51
Cpsf1Q9EPU4 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
Cpsf1Q9EPU4 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Borcs6-201ENSMUST00000051888 1862 ntAPPRIS P1 BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
Cpsf1Q9EPU4 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Cpsf1Q9EPU4 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
Cpsf1Q9EPU4 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC30.72■■■□□ 2.51
Cpsf1Q9EPU4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 Jund-201ENSMUST00000095267 1668 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
Cpsf1Q9EPU4 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC30.71■■■□□ 2.51
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms