Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 Bend7-202ENSMUST00000115022 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Ptchd3Q0EEE2 Gm11599-201ENSMUST00000118720 878 ntBASIC21.05■□□□□ 0.96
Ptchd3Q0EEE2 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Ptchd3Q0EEE2 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ptchd3Q0EEE2 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ptchd3Q0EEE2 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ptchd3Q0EEE2 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Ptchd3Q0EEE2 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Ptchd3Q0EEE2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Ptchd3Q0EEE2 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Ptchd3Q0EEE2 Gm32051-202ENSMUST00000197905 2385 ntBASIC21.02■□□□□ 0.96
Ptchd3Q0EEE2 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
Ptchd3Q0EEE2 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Ptchd3Q0EEE2 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 March5-201ENSMUST00000024078 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 Rab40b-201ENSMUST00000106107 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Ptchd3Q0EEE2 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Ptchd3Q0EEE2 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
Ptchd3Q0EEE2 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Ptchd3Q0EEE2 Gm4799-201ENSMUST00000095396 657 ntBASIC20.98■□□□□ 0.95
Ptchd3Q0EEE2 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Ptchd3Q0EEE2 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Ptchd3Q0EEE2 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Ptchd3Q0EEE2 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Ptchd3Q0EEE2 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ptchd3Q0EEE2 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Ptchd3Q0EEE2 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Ptchd3Q0EEE2 Cep68-202ENSMUST00000109596 2171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ptchd3Q0EEE2 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Ptchd3Q0EEE2 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ptchd3Q0EEE2 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Ptchd3Q0EEE2 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
Ptchd3Q0EEE2 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Ptchd3Q0EEE2 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ptchd3Q0EEE2 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ptchd3Q0EEE2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ptchd3Q0EEE2 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ptchd3Q0EEE2 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ptchd3Q0EEE2 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ptchd3Q0EEE2 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ptchd3Q0EEE2 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ptchd3Q0EEE2 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC20.91■□□□□ 0.94
Ptchd3Q0EEE2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ptchd3Q0EEE2 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ptchd3Q0EEE2 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ptchd3Q0EEE2 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Ptchd3Q0EEE2 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.9■□□□□ 0.94
Ptchd3Q0EEE2 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ptchd3Q0EEE2 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC20.89■□□□□ 0.94
Ptchd3Q0EEE2 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ptchd3Q0EEE2 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ptchd3Q0EEE2 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ptchd3Q0EEE2 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.89■□□□□ 0.93
Ptchd3Q0EEE2 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms