Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.83■□□□□ 0.28
Limch1Q3UH68 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Limch1Q3UH68 Gm21451-201ENSMUST00000111062 2775 ntBASIC16.83■□□□□ 0.28
Limch1Q3UH68 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Bid-201ENSMUST00000004560 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Poli-202ENSMUST00000121674 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Diablo-202ENSMUST00000111586 719 ntTSL 5 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Gm15693-201ENSMUST00000120470 637 ntBASIC16.82■□□□□ 0.28
Limch1Q3UH68 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Gm18737-201ENSMUST00000173594 937 ntBASIC16.82■□□□□ 0.28
Limch1Q3UH68 Gm27920-201ENSMUST00000183953 96 ntBASIC16.82■□□□□ 0.28
Limch1Q3UH68 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 CT025535.1-201ENSMUST00000227172 491 ntBASIC16.82■□□□□ 0.28
Limch1Q3UH68 Diablo-201ENSMUST00000031385 681 ntTSL 2 BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Limch1Q3UH68 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm16845-201ENSMUST00000180419 1415 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm12428-201ENSMUST00000119844 727 ntBASIC16.81■□□□□ 0.28
Limch1Q3UH68 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC16.81■□□□□ 0.28
Limch1Q3UH68 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Gm12503-201ENSMUST00000146576 3127 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Pja1-205ENSMUST00000167246 2666 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC16.81■□□□□ 0.28
Limch1Q3UH68 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Gm2810-201ENSMUST00000118681 990 ntBASIC16.8■□□□□ 0.28
Limch1Q3UH68 Dph3-205ENSMUST00000124303 809 ntTSL 2 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Mir6977-201ENSMUST00000184960 64 ntBASIC16.8■□□□□ 0.28
Limch1Q3UH68 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Trim68-205ENSMUST00000210855 2301 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 Kctd14-201ENSMUST00000050732 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Limch1Q3UH68 2810408A11Rik-202ENSMUST00000100969 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Limch1Q3UH68 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms