Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Ssc4d-202ENSMUST00000111150 459 ntTSL 2 BASIC21.47■■□□□ 1.03
Col17a1Q07563 Ptbp2-210ENSMUST00000198403 389 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Gm34376-201ENSMUST00000218529 2107 ntTSL 5 BASIC21.47■■□□□ 1.03
Col17a1Q07563 AC159103.1-201ENSMUST00000228325 429 ntBASIC21.47■■□□□ 1.03
Col17a1Q07563 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
Col17a1Q07563 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
Col17a1Q07563 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
Col17a1Q07563 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col17a1Q07563 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Mapkapk5-204ENSMUST00000111783 1513 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Gm2762-202ENSMUST00000201517 2339 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC21.46■■□□□ 1.03
Col17a1Q07563 AC174797.2-202ENSMUST00000225729 568 ntBASIC21.46■■□□□ 1.03
Col17a1Q07563 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Col17a1Q07563 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Gm45412-201ENSMUST00000210217 2275 ntBASIC21.46■■□□□ 1.03
Col17a1Q07563 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Crry-ps-201ENSMUST00000079090 1309 ntBASIC21.46■■□□□ 1.03
Col17a1Q07563 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Naaa-202ENSMUST00000159345 1629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Gm43072-201ENSMUST00000200283 1671 ntBASIC21.46■■□□□ 1.03
Col17a1Q07563 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col17a1Q07563 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Col17a1Q07563 Gm9062-201ENSMUST00000117712 727 ntBASIC21.45■■□□□ 1.03
Col17a1Q07563 Abhd3-202ENSMUST00000117726 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
Col17a1Q07563 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC21.45■■□□□ 1.03
Col17a1Q07563 Gm13388-201ENSMUST00000126659 425 ntTSL 3 BASIC21.45■■□□□ 1.03
Col17a1Q07563 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
Col17a1Q07563 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC21.45■■□□□ 1.03
Col17a1Q07563 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC21.45■■□□□ 1.03
Col17a1Q07563 Jakmip1-215ENSMUST00000212047 1191 ntTSL 5 BASIC21.45■■□□□ 1.03
Col17a1Q07563 Rn7sk-201ENSMUST00000083103 331 ntBASIC21.45■■□□□ 1.03
Col17a1Q07563 Gm26315-201ENSMUST00000083890 321 ntBASIC21.45■■□□□ 1.03
Col17a1Q07563 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Col17a1Q07563 Ankrd50-201ENSMUST00000094300 1944 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Tesmin-202ENSMUST00000127142 1714 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Col17a1Q07563 A430005L14Rik-202ENSMUST00000105645 977 ntTSL 3 BASIC21.45■■□□□ 1.02
Col17a1Q07563 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 Gngt2-205ENSMUST00000107711 563 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
Col17a1Q07563 Rln1-201ENSMUST00000044143 745 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col17a1Q07563 AC159196.2-201ENSMUST00000224082 1622 ntBASIC21.45■■□□□ 1.02
Col17a1Q07563 Bbs5-201ENSMUST00000074963 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Umad1-208ENSMUST00000162034 2015 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Exosc5-206ENSMUST00000206561 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Dnajc30-201ENSMUST00000071263 1661 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Gm10369-201ENSMUST00000100641 1148 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Cstl1-202ENSMUST00000109954 454 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Gm44064-201ENSMUST00000204964 1087 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Gm7848-201ENSMUST00000210739 718 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 AC134254.1-201ENSMUST00000221362 167 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 AC156501.1-201ENSMUST00000228219 270 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Ntng1-201ENSMUST00000051253 327 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col17a1Q07563 Gm42473-201ENSMUST00000201056 2291 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC21.44■■□□□ 1.02
Col17a1Q07563 Tubb4b-ps2-201ENSMUST00000187481 1337 ntBASIC21.44■■□□□ 1.02
Col17a1Q07563 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Col17a1Q07563 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC21.43■■□□□ 1.02
Col17a1Q07563 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 72.5 ms