Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Sept1-202ENSMUST00000106314 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm40765-201ENSMUST00000218612 1469 ntTSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Gm9252-201ENSMUST00000172364 1602 ntBASIC12.33□□□□□ -0.44
Nkx3-1P97436 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Nkx3-1P97436 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Pcgf5-211ENSMUST00000225920 6443 ntBASIC12.32□□□□□ -0.44
Nkx3-1P97436 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Snrnp27-202ENSMUST00000113683 1005 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Gm15222-201ENSMUST00000127359 344 ntTSL 3 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Ip6k2-210ENSMUST00000194875 748 ntTSL 2 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Gm18624-201ENSMUST00000220966 658 ntBASIC12.32□□□□□ -0.44
Nkx3-1P97436 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Klc1-203ENSMUST00000120544 2261 ntAPPRIS ALT1 TSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Fgf5-201ENSMUST00000031280 2501 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
Nkx3-1P97436 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Sgpl1-202ENSMUST00000122259 4102 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Smarcd1-201ENSMUST00000023759 3153 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Adgrd2-ps-201ENSMUST00000118797 2662 ntBASIC12.31□□□□□ -0.44
Nkx3-1P97436 Prrt2-201ENSMUST00000159916 2501 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Gm14780-201ENSMUST00000118387 2737 ntBASIC12.31□□□□□ -0.44
Nkx3-1P97436 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 4933405L10Rik-202ENSMUST00000211852 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Cks1b-201ENSMUST00000029679 849 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Tox3-201ENSMUST00000109621 3356 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
Nkx3-1P97436 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Cd300lf-203ENSMUST00000106562 1762 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Gm45760-201ENSMUST00000212190 1782 ntBASIC12.3□□□□□ -0.44
Nkx3-1P97436 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
Nkx3-1P97436 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms