Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 REXO1L11P-201ENST00000620964 1927 ntBASIC16.79■□□□□ 0.28
VPS4AQ9UN37 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 GUSBP12-201ENST00000513727 720 ntBASIC16.79■□□□□ 0.28
VPS4AQ9UN37 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 REXO1L6P-202ENST00000619970 1078 ntBASIC16.79■□□□□ 0.28
VPS4AQ9UN37 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4AQ9UN37 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 FAM197Y8-203ENST00000450145 560 ntBASIC16.78■□□□□ 0.28
VPS4AQ9UN37 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 AC009154.2-201ENST00000621177 724 ntBASIC16.78■□□□□ 0.28
VPS4AQ9UN37 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4AQ9UN37 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 PMS2P7-201ENST00000506558 1336 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 AP001094.4-201ENST00000579008 2176 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 AKR1C7P-201ENST00000305623 895 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 NUS1P2-201ENST00000417358 873 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 AF186996.4-201ENST00000467186 377 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 TERC-201ENST00000602385 541 ntBASIC16.77■□□□□ 0.28
VPS4AQ9UN37 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4AQ9UN37 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4AQ9UN37 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms