Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Ccne2-207ENSMUST00000170901 3006 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Impad1-201ENSMUST00000084949 6543 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Ushbp1Q8R370 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ushbp1Q8R370 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ushbp1Q8R370 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Ushbp1Q8R370 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Ralgapa2-211ENSMUST00000228797 8245 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Klk2-ps-201ENSMUST00000205342 571 ntBASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Rspry1-202ENSMUST00000121101 3092 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Coq6-203ENSMUST00000110278 1354 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Ccnt2-202ENSMUST00000112570 4511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Tepsin-203ENSMUST00000106225 2566 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Ushbp1Q8R370 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Ppfia3-201ENSMUST00000003961 4647 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Gm6973-201ENSMUST00000117080 721 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 1700021F05Rik-202ENSMUST00000147196 860 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 AI413582-204ENSMUST00000154473 836 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Gm27618-201ENSMUST00000183671 60 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Gm27920-201ENSMUST00000183953 96 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Gm17837-201ENSMUST00000186435 985 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Gm38294-201ENSMUST00000192831 381 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Ushbp1Q8R370 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Pxdn-201ENSMUST00000118321 2698 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Spo11-201ENSMUST00000050442 1709 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Kansl3-206ENSMUST00000187628 336 ntTSL 5 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC16.06■□□□□ 0.16
Ushbp1Q8R370 Gm2423-201ENSMUST00000074863 733 ntBASIC16.06■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms