Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Paxx-201ENSMUST00000114261 981 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Gm13464-201ENSMUST00000119418 935 ntBASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Fgfr1op2-201ENSMUST00000037836 687 ntTSL 3 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Gm5867-201ENSMUST00000063197 592 ntBASIC15.23■□□□□ 0.03
Syne3Q4FZC9 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Gm20482-201ENSMUST00000172746 1644 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Zbtb20-203ENSMUST00000114691 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 2810402E24Rik-201ENSMUST00000190699 3040 ntBASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Cbfb-203ENSMUST00000109394 2487 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Syt1-201ENSMUST00000064054 4745 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Lats2-210ENSMUST00000174694 3287 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
Syne3Q4FZC9 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Xrcc1-201ENSMUST00000063249 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Ern1-202ENSMUST00000106799 660 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm15483-201ENSMUST00000120338 456 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm26308-201ENSMUST00000157768 69 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm9726-201ENSMUST00000180321 678 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Orc6-201ENSMUST00000034132 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Ptprn2-201ENSMUST00000070733 3201 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Syne3Q4FZC9 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Gm13365-201ENSMUST00000121188 973 ntBASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.21■□□□□ 0.03
Syne3Q4FZC9 Wsb1-201ENSMUST00000017821 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Syne3Q4FZC9 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 39.2 ms