Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Vps28Q9D1C8 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Tmem184a-201ENSMUST00000044002 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 E2f3-203ENSMUST00000221536 4597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 E2f3-204ENSMUST00000222730 4579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Gm37277-201ENSMUST00000194052 1111 ntBASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Stxbp1-201ENSMUST00000050000 3892 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Myo9b-203ENSMUST00000170242 7297 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Tle1-202ENSMUST00000072695 3644 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
Vps28Q9D1C8 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Lrp11-201ENSMUST00000019931 3386 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm3054-201ENSMUST00000111075 265 ntTSL 5 BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm23547-201ENSMUST00000158210 271 ntBASIC14.71□□□□□ -0.05
Vps28Q9D1C8 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Vps53-201ENSMUST00000056601 2833 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Vps28Q9D1C8 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Zfp57-202ENSMUST00000089968 1991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Carlr-201ENSMUST00000181515 2574 ntBASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.71□□□□□ -0.06
Vps28Q9D1C8 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Lancl3-201ENSMUST00000069763 3991 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 4921504A21Rik-201ENSMUST00000180594 2156 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Nme1-202ENSMUST00000107844 452 ntTSL 3 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 AC126408.1-201ENSMUST00000225184 523 ntBASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
Vps28Q9D1C8 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC14.69□□□□□ -0.06
Vps28Q9D1C8 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms