Protein–RNA interactions for Protein: Q99LF4

Rtcb, tRNA-splicing ligase RtcB homolog, mousemouse

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RtcbQ99LF4 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Zbtb25-205ENSMUST00000176509 1591 ntTSL 2 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gm15816-201ENSMUST00000141930 1688 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.62■□□□□ 0.41
RtcbQ99LF4 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gm15376-201ENSMUST00000122258 783 ntBASIC17.62■□□□□ 0.41
RtcbQ99LF4 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gm5276-201ENSMUST00000196683 1047 ntBASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Mpv17-209ENSMUST00000202241 903 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Aym1-201ENSMUST00000066573 528 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Wdr83-201ENSMUST00000093357 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Vps51-201ENSMUST00000025711 2489 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Hjurp-206ENSMUST00000147393 2030 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Gtf2ird1-208ENSMUST00000167084 3283 ntTSL 5 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RtcbQ99LF4 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Gm27572-201ENSMUST00000183702 255 ntBASIC17.61■□□□□ 0.41
RtcbQ99LF4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Rbm42-201ENSMUST00000042726 1784 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RtcbQ99LF4 Bmp4-201ENSMUST00000074077 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Gm26464-201ENSMUST00000157094 305 ntBASIC17.6■□□□□ 0.41
RtcbQ99LF4 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Gm42442-201ENSMUST00000197951 1133 ntBASIC17.6■□□□□ 0.41
RtcbQ99LF4 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Gm10012-201ENSMUST00000078252 192 ntBASIC17.6■□□□□ 0.41
RtcbQ99LF4 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Apbb1-212ENSMUST00000189072 2085 ntTSL 5 BASIC17.6■□□□□ 0.41
RtcbQ99LF4 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Pcdhgc4-203ENSMUST00000195239 2272 ntTSL 3 BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RtcbQ99LF4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Tcf3-201ENSMUST00000020377 2842 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gk5-201ENSMUST00000085217 2815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Med20-201ENSMUST00000024778 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gm13689-201ENSMUST00000119360 685 ntBASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gm13385-201ENSMUST00000121089 220 ntBASIC17.59■□□□□ 0.41
RtcbQ99LF4 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 AC126253.1-201ENSMUST00000227974 824 ntBASIC17.59■□□□□ 0.41
RtcbQ99LF4 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Abl1-201ENSMUST00000028190 5794 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Acadm-201ENSMUST00000072697 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
RtcbQ99LF4 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
RtcbQ99LF4 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms