Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ubfd1Q78JW9 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ubfd1Q78JW9 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Gm4875-201ENSMUST00000118257 786 ntBASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Gm7820-201ENSMUST00000121012 1052 ntBASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Gm24694-201ENSMUST00000180054 110 ntBASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Gm27663-201ENSMUST00000184839 110 ntBASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Gas2l3-207ENSMUST00000220128 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubfd1Q78JW9 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Ldha-202ENSMUST00000048209 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Pla2g2e-202ENSMUST00000105803 381 ntTSL 5 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Apoo-203ENSMUST00000113897 1218 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 AI467606-202ENSMUST00000206102 832 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Camk2d-204ENSMUST00000106400 2722 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Camk2g-217ENSMUST00000226630 1937 ntBASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ubfd1Q78JW9 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gm3365-201ENSMUST00000216296 1480 ntBASIC14□□□□□ -0.17
Ubfd1Q78JW9 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Xylt2-201ENSMUST00000116349 3442 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Hist1h2br-202ENSMUST00000110476 381 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gm16215-201ENSMUST00000161990 637 ntBASIC14□□□□□ -0.17
Ubfd1Q78JW9 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Cela1-201ENSMUST00000023775 1103 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Myoz3-201ENSMUST00000056533 870 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Hist1h2bq-201ENSMUST00000078156 381 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Kcnip2-203ENSMUST00000086993 1005 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gm10584-201ENSMUST00000207036 2628 ntBASIC14□□□□□ -0.17
Ubfd1Q78JW9 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Psen2-201ENSMUST00000010753 2004 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ubfd1Q78JW9 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 45.6 ms