Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Pprc1-202ENSMUST00000099392 3956 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Gm7222-201ENSMUST00000117512 906 ntBASIC14□□□□□ -0.17
Col28a1Q2UY11 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Gm13431-203ENSMUST00000147012 388 ntTSL 2 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 1300017J02Rik-201ENSMUST00000035163 2284 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Rnf122-205ENSMUST00000217278 1726 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Serpinh1-205ENSMUST00000208119 2173 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Chrnb1-201ENSMUST00000045971 2155 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Col28a1Q2UY11 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Zfp346-201ENSMUST00000021937 3333 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col28a1Q2UY11 Gm10110-201ENSMUST00000081204 1891 ntTSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Itgb3-201ENSMUST00000021028 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Gins3-201ENSMUST00000034094 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Slc7a7-209ENSMUST00000226753 2126 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Gm3928-201ENSMUST00000121141 1307 ntBASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Trav13-3-201ENSMUST00000117226 336 ntBASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Arl6ip1-201ENSMUST00000032888 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Ankrd34b-203ENSMUST00000168871 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col28a1Q2UY11 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Kcnj9-202ENSMUST00000194204 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Leng8-201ENSMUST00000037472 5105 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Celf4-203ENSMUST00000223704 2492 ntAPPRIS ALT1 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm25911-201ENSMUST00000157621 56 ntBASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm27646-201ENSMUST00000183989 110 ntBASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gpr157-201ENSMUST00000094451 4900 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Plch2-208ENSMUST00000145662 1818 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Kcnq2-202ENSMUST00000049792 2920 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Srp72-202ENSMUST00000120550 2297 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Gm5184-201ENSMUST00000220417 1702 ntBASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Matn2-206ENSMUST00000228570 2798 ntBASIC13.98□□□□□ -0.17
Col28a1Q2UY11 4930579G24Rik-201ENSMUST00000029388 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Popdc2-201ENSMUST00000023494 2169 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Phactr3-204ENSMUST00000108916 2656 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Zfp747-201ENSMUST00000067425 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Col28a1Q2UY11 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Ssh3-201ENSMUST00000037992 2728 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Sufu-203ENSMUST00000118440 2663 ntTSL 5 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC13.97□□□□□ -0.17
Col28a1Q2UY11 Gm10576-201ENSMUST00000191927 825 ntBASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms