Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.93■□□□□ 0.46
CDX2Q99626 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.93■□□□□ 0.46
CDX2Q99626 RPL37AP1-201ENST00000412502 279 ntBASIC17.93■□□□□ 0.46
CDX2Q99626 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.93■□□□□ 0.46
CDX2Q99626 DOC2GP-202ENST00000514950 1163 ntBASIC17.93■□□□□ 0.46
CDX2Q99626 AC104989.1-201ENST00000519711 778 ntBASIC17.93■□□□□ 0.46
CDX2Q99626 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.93■□□□□ 0.46
CDX2Q99626 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.93■□□□□ 0.46
CDX2Q99626 AC008735.3-201ENST00000596646 500 ntBASIC17.93■□□□□ 0.46
CDX2Q99626 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.93■□□□□ 0.46
CDX2Q99626 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CDX2Q99626 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
CDX2Q99626 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 AL135999.2-201ENST00000622438 1686 ntBASIC17.93■□□□□ 0.46
CDX2Q99626 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CDX2Q99626 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CDX2Q99626 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX2Q99626 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX2Q99626 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 ANKRD19P-201ENST00000338192 862 ntBASIC17.92■□□□□ 0.46
CDX2Q99626 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX2Q99626 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC17.92■□□□□ 0.46
CDX2Q99626 CD81-207ENST00000481687 890 ntTSL 2 BASIC17.92■□□□□ 0.46
CDX2Q99626 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.92■□□□□ 0.46
CDX2Q99626 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
CDX2Q99626 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC17.92■□□□□ 0.46
CDX2Q99626 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.92■□□□□ 0.46
CDX2Q99626 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 AC009949.1-201ENST00000623048 1830 ntBASIC17.92■□□□□ 0.46
CDX2Q99626 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CDX2Q99626 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
CDX2Q99626 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CDX2Q99626 AL035456.1-201ENST00000456064 1369 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CDX2Q99626 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 CETN4P-206ENST00000642099 2168 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.91■□□□□ 0.46
CDX2Q99626 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 BTBD7P1-201ENST00000447253 1453 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 AC142381.1-201ENST00000426099 345 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 GOLGA2P4-201ENST00000441462 777 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 CROCCP4-201ENST00000457096 498 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 AL583810.1-201ENST00000553344 1045 ntBASIC17.91■□□□□ 0.46
CDX2Q99626 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.91■□□□□ 0.46
CDX2Q99626 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.91■□□□□ 0.46
CDX2Q99626 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.91■□□□□ 0.46
CDX2Q99626 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CDX2Q99626 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CDX2Q99626 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CDX2Q99626 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.9■□□□□ 0.46
CDX2Q99626 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDX2Q99626 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.9■□□□□ 0.46
CDX2Q99626 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDX2Q99626 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
CDX2Q99626 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
CDX2Q99626 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
CDX2Q99626 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
CDX2Q99626 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.9■□□□□ 0.46
CDX2Q99626 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms