Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Tac2-202ENSMUST00000179960 852 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Gm6283-201ENSMUST00000182369 1000 ntBASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Gm45384-201ENSMUST00000210451 277 ntBASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Tac2-201ENSMUST00000026466 678 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Prss38-201ENSMUST00000061481 1243 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Selplg-201ENSMUST00000100874 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Usp40Q8BWR4 Gm16425-201ENSMUST00000118143 3130 ntBASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Cnmd-201ENSMUST00000022603 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Trav3d-3-201ENSMUST00000103599 276 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Trav3n-3-201ENSMUST00000103625 276 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Gm11574-201ENSMUST00000139752 946 ntTSL 5 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Trav3-3-202ENSMUST00000183835 276 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Ighv5-13-201ENSMUST00000193550 290 ntBASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Ighv8-14-201ENSMUST00000196781 358 ntBASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Sytl1-201ENSMUST00000030674 1951 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Pnck-201ENSMUST00000002087 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Usp40Q8BWR4 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Polr3d-202ENSMUST00000180358 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Gm19220-201ENSMUST00000222682 803 ntBASIC19.68■□□□□ 0.74
Usp40Q8BWR4 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 AC155729.1-201ENSMUST00000227758 544 ntBASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Usp40Q8BWR4 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Espnl-201ENSMUST00000088904 5445 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Cacna1b-204ENSMUST00000102939 9736 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Gm45212-201ENSMUST00000205831 3403 ntBASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Nfe2-205ENSMUST00000133600 1605 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Gsg1l2-202ENSMUST00000181566 1158 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Gm5354-201ENSMUST00000182417 973 ntBASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Gm44608-201ENSMUST00000206827 855 ntBASIC19.67■□□□□ 0.74
Usp40Q8BWR4 AC155286.1-201ENSMUST00000218632 448 ntBASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 AC154412.1-201ENSMUST00000226540 2786 ntBASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Slit1-203ENSMUST00000169141 5673 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Usp40Q8BWR4 Slc44a5-201ENSMUST00000089948 4098 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Itpk1-201ENSMUST00000046518 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Narfl-204ENSMUST00000134108 2062 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Usp40Q8BWR4 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms