Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Emilin3-201ENSMUST00000057169 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Six1-201ENSMUST00000050029 3316 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Msh4Q99MT2 Gm43205-201ENSMUST00000198622 1968 ntBASIC14.09□□□□□ -0.15
Msh4Q99MT2 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Zc3h13-201ENSMUST00000022577 6151 ntAPPRIS P2 TSL 5 BASIC14.08□□□□□ -0.15
Msh4Q99MT2 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Msh4Q99MT2 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Rerg-203ENSMUST00000119610 890 ntTSL 3 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm13365-201ENSMUST00000121188 973 ntBASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm17251-201ENSMUST00000170103 925 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm43767-201ENSMUST00000198933 381 ntBASIC14.08□□□□□ -0.16
Msh4Q99MT2 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 AC126250.1-201ENSMUST00000228343 1768 ntBASIC14.08□□□□□ -0.16
Msh4Q99MT2 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 A430034D21Rik-201ENSMUST00000194339 1802 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC14.08□□□□□ -0.16
Msh4Q99MT2 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Gm11946-201ENSMUST00000123459 3941 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Msh4Q99MT2 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Jun-201ENSMUST00000107094 3189 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 AC167013.2-201ENSMUST00000228520 2684 ntBASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Rprl2-201ENSMUST00000157150 290 ntBASIC14.07□□□□□ -0.16
Msh4Q99MT2 Gm16026-204ENSMUST00000162652 683 ntBASIC14.07□□□□□ -0.16
Msh4Q99MT2 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Gm5628-201ENSMUST00000222318 1049 ntBASIC14.07□□□□□ -0.16
Msh4Q99MT2 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Foxs1-201ENSMUST00000099200 1311 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Sema6b-202ENSMUST00000167545 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Msh4Q99MT2 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Msh4Q99MT2 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msh4Q99MT2 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msh4Q99MT2 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msh4Q99MT2 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Msh4Q99MT2 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms