Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gm22171-201ENSMUST00000179283 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm23936-201ENSMUST00000179354 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm22619-201ENSMUST00000179516 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25255-201ENSMUST00000179579 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24755-201ENSMUST00000179691 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm26506-201ENSMUST00000179692 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm25086-201ENSMUST00000179931 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm23243-201ENSMUST00000180047 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24659-201ENSMUST00000180212 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm24169-201ENSMUST00000180244 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm23689-201ENSMUST00000180354 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm27359-201ENSMUST00000184153 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm27785-201ENSMUST00000184268 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm27466-201ENSMUST00000184396 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm27703-201ENSMUST00000184836 110 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm18057-201ENSMUST00000208220 503 ntBASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Thap12-201ENSMUST00000033009 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Ushbp1Q8R370 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Gm43438-201ENSMUST00000198133 379 ntBASIC16.21■□□□□ 0.19
Ushbp1Q8R370 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Gldn-201ENSMUST00000056740 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Ushbp1Q8R370 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 P4ha2-201ENSMUST00000019050 2230 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
Ushbp1Q8R370 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Gm16976-201ENSMUST00000099718 1894 ntTSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Atl1-201ENSMUST00000021466 5150 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 CT025555.1-201ENSMUST00000225901 1217 ntBASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Dmrt1-202ENSMUST00000087525 1130 ntTSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Egfl7-202ENSMUST00000102907 1372 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Cgn-202ENSMUST00000107273 5016 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 Rps6ka5-201ENSMUST00000043599 4406 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Ushbp1Q8R370 AC159621.2-201ENSMUST00000223519 1326 ntBASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Crhr2-209ENSMUST00000213026 1443 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 App-204ENSMUST00000227021 3264 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Ushbp1Q8R370 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 52 ms