Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Psap-202ENSMUST00000105465 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim27Q62158 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim27Q62158 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim27Q62158 Hp1bp3-202ENSMUST00000097836 3113 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim27Q62158 Traf2-201ENSMUST00000028311 3044 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim27Q62158 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Acyp1-203ENSMUST00000117138 735 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Trim27Q62158 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim27Q62158 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC17.75■□□□□ 0.43
Trim27Q62158 Gm29541-201ENSMUST00000191351 678 ntBASIC17.75■□□□□ 0.43
Trim27Q62158 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC17.75■□□□□ 0.43
Trim27Q62158 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC17.75■□□□□ 0.43
Trim27Q62158 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim27Q62158 Ube2l6-201ENSMUST00000102642 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Rhbdl1-202ENSMUST00000183929 1349 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim27Q62158 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Bcat2-202ENSMUST00000120864 1536 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim27Q62158 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Gli1-201ENSMUST00000026474 4057 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Zfp853-201ENSMUST00000180336 1956 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim27Q62158 Gm25287-201ENSMUST00000103846 110 ntBASIC17.74■□□□□ 0.43
Trim27Q62158 Gm22918-201ENSMUST00000103855 110 ntBASIC17.74■□□□□ 0.43
Trim27Q62158 AC131710.1-201ENSMUST00000228336 990 ntBASIC17.74■□□□□ 0.43
Trim27Q62158 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Plxdc2-203ENSMUST00000114703 2061 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim27Q62158 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Trim27Q62158 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.74■□□□□ 0.43
Trim27Q62158 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim27Q62158 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Mrps9-201ENSMUST00000057208 1418 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Tmtc2-201ENSMUST00000061506 5629 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
Trim27Q62158 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Kcnj8-202ENSMUST00000203945 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Trf-201ENSMUST00000035158 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim27Q62158 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Hsd3b7-203ENSMUST00000106272 1725 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Ak1-201ENSMUST00000068271 2034 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Cd72-202ENSMUST00000098104 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Traf1-201ENSMUST00000028234 2069 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Mpl-201ENSMUST00000006556 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Pfkfb3-205ENSMUST00000114845 1971 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 P2rx3-202ENSMUST00000111613 1764 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.72■□□□□ 0.43
Trim27Q62158 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trim27Q62158 Gm26847-201ENSMUST00000180407 2109 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Ywhag-205ENSMUST00000198270 1610 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Slc25a32-201ENSMUST00000022908 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
Trim27Q62158 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC17.72■□□□□ 0.43
Trim27Q62158 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Adra1b-204ENSMUST00000167574 3047 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trim27Q62158 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Epsti1-201ENSMUST00000022591 1870 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Slc22a20-201ENSMUST00000041827 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
Trim27Q62158 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trim27Q62158 Arhgap8-205ENSMUST00000168811 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trim27Q62158 Etfdh-201ENSMUST00000029386 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms