Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm15199-201ENSMUST00000129933 542 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm18766-201ENSMUST00000189811 808 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm6888-201ENSMUST00000221983 706 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm10313-201ENSMUST00000095320 1002 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Mxra8os-201ENSMUST00000097740 687 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm6756-201ENSMUST00000180647 1620 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Carlr-201ENSMUST00000181515 2574 ntBASIC13.12□□□□□ -0.31
Lmx1bO88609 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Ttll11-201ENSMUST00000028248 3176 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Gm26702-201ENSMUST00000181730 4570 ntTSL 5 BASIC13.12□□□□□ -0.31
Lmx1bO88609 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
Lmx1bO88609 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Fam167a-201ENSMUST00000121288 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Slc33a1-202ENSMUST00000160883 1978 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Nr2f1-202ENSMUST00000125176 841 ntTSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Cd209f-202ENSMUST00000138439 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm14493-201ENSMUST00000141174 543 ntTSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Cd209f-203ENSMUST00000145007 1186 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm5479-201ENSMUST00000160578 435 ntBASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Gm5626-201ENSMUST00000222151 1058 ntBASIC13.11□□□□□ -0.31
Lmx1bO88609 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Cchcr1-201ENSMUST00000045956 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
Lmx1bO88609 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.11□□□□□ -0.31
Lmx1bO88609 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Lmx1bO88609 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
Lmx1bO88609 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Vps53-204ENSMUST00000129256 650 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Bricd5-202ENSMUST00000164508 701 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Lmx1bO88609 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Lmx1bO88609 Gm4793-201ENSMUST00000067468 2616 ntTSL 2 BASIC13.1□□□□□ -0.31
Lmx1bO88609 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms