Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Morc4-201ENSMUST00000033811 4412 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gcsh-201ENSMUST00000040484 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Pkig-209ENSMUST00000164399 983 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gm10275-202ENSMUST00000168697 495 ntBASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gm27306-201ENSMUST00000183970 107 ntBASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Mpv17-203ENSMUST00000200833 1171 ntTSL 5 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 AC090659.2-201ENSMUST00000225378 1186 ntBASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gm10275-201ENSMUST00000092620 635 ntBASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Cblb-201ENSMUST00000114471 6648 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trim47Q8C0E3 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Hic1-201ENSMUST00000055619 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Dctn1-201ENSMUST00000077407 4118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Adam9-202ENSMUST00000084035 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm24543-201ENSMUST00000103867 82 ntBASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm6222-201ENSMUST00000120787 396 ntBASIC16.04■□□□□ 0.16
Trim47Q8C0E3 1700110K17Rik-202ENSMUST00000156511 927 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm25144-201ENSMUST00000179561 110 ntBASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm25352-201ENSMUST00000179815 110 ntBASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Mir7023-201ENSMUST00000185093 64 ntBASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Gpc6-201ENSMUST00000078849 1668 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.04■□□□□ 0.16
Trim47Q8C0E3 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Gm13453-201ENSMUST00000118708 357 ntBASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Gm12428-201ENSMUST00000119844 727 ntBASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Elavl3-201ENSMUST00000003501 5014 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Nupl2-201ENSMUST00000049887 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trim47Q8C0E3 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Fundc1-201ENSMUST00000026016 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Gm43598-201ENSMUST00000202482 2479 ntBASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Gm12151-201ENSMUST00000121374 290 ntBASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Mir1897-201ENSMUST00000122581 272 ntBASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Gm27989-201ENSMUST00000184721 107 ntBASIC16.02■□□□□ 0.16
Trim47Q8C0E3 AC123645.1-201ENSMUST00000228469 605 ntBASIC16.02■□□□□ 0.16
Trim47Q8C0E3 Rhox9-201ENSMUST00000089062 882 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 31.5 ms