Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Chodl-201ENSMUST00000023568 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Vapb-201ENSMUST00000067530 7029 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Gm37297-201ENSMUST00000192974 2384 ntBASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Kcp-201ENSMUST00000078112 4775 ntTSL 5 BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Fbxl12-205ENSMUST00000140702 1555 ntBASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Chmp6P0C0A3 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Gm16796-201ENSMUST00000126086 3172 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Gm43399-201ENSMUST00000202546 2374 ntBASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Anks1b-204ENSMUST00000179337 2692 ntTSL 5 BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Gm12017-201ENSMUST00000122453 1003 ntBASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Rprl2-201ENSMUST00000157150 290 ntBASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Gm45612-201ENSMUST00000211320 160 ntBASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Chmp6P0C0A3 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Usp42-201ENSMUST00000053287 5151 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Chmp6P0C0A3 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Ccdc157-201ENSMUST00000093381 5015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Slc25a19-201ENSMUST00000021089 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm15483-201ENSMUST00000120338 456 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm13365-201ENSMUST00000121188 973 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm26308-201ENSMUST00000157768 69 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 CT030684.1-201ENSMUST00000227292 914 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 AC164565.1-201ENSMUST00000217520 1484 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Col3a1-201ENSMUST00000087883 5564 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm13233-201ENSMUST00000118760 1443 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm13244-201ENSMUST00000118855 1446 ntBASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
Chmp6P0C0A3 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Gm13332-201ENSMUST00000120451 1398 ntBASIC15.75■□□□□ 0.11
Chmp6P0C0A3 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms