Protein–RNA interactions for Protein: O55187

Cbx4, E3 SUMO-protein ligase CBX4, mousemouse

Predictions only

Length 551 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cbx4O55187 Zscan22-204ENSMUST00000120809 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Gm4081-201ENSMUST00000195287 1838 ntBASIC14.19□□□□□ -0.14
Cbx4O55187 Gpt2-201ENSMUST00000034136 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Cbx4O55187 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Fbxo25-201ENSMUST00000043520 2012 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Cbx4O55187 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Kctd14-204ENSMUST00000205577 2310 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Cbx4O55187 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC14.18□□□□□ -0.14
Cbx4O55187 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Gm14042-201ENSMUST00000120139 833 ntBASIC14.18□□□□□ -0.14
Cbx4O55187 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Gm11025-201ENSMUST00000140773 466 ntBASIC14.18□□□□□ -0.14
Cbx4O55187 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC14.18□□□□□ -0.14
Cbx4O55187 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.18□□□□□ -0.14
Cbx4O55187 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Gm27920-201ENSMUST00000183953 96 ntBASIC14.18□□□□□ -0.14
Cbx4O55187 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 C1qa-201ENSMUST00000046285 1040 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Gpr146-202ENSMUST00000053120 1040 ntBASIC14.18□□□□□ -0.14
Cbx4O55187 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Ttc24-201ENSMUST00000050258 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC14.18□□□□□ -0.14
Cbx4O55187 Sptlc1-201ENSMUST00000021920 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Cbx4O55187 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
Cbx4O55187 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Wbscr25-202ENSMUST00000148729 2075 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Cbx4O55187 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Mst1-201ENSMUST00000035211 2262 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Asic3-201ENSMUST00000049346 1853 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Rasal3-204ENSMUST00000135618 3293 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Cbx4O55187 Arhgef33-201ENSMUST00000068175 3260 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Rbm26-201ENSMUST00000022715 3633 ntTSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Gm9252-201ENSMUST00000172364 1602 ntBASIC14.17□□□□□ -0.14
Cbx4O55187 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Cbx4O55187 Gm6973-201ENSMUST00000117080 721 ntBASIC14.17□□□□□ -0.14
Cbx4O55187 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC14.17□□□□□ -0.14
Cbx4O55187 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC14.17□□□□□ -0.14
Cbx4O55187 Gm11543-201ENSMUST00000120758 370 ntBASIC14.17□□□□□ -0.14
Cbx4O55187 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 Gm27702-201ENSMUST00000184512 56 ntBASIC14.17□□□□□ -0.14
Cbx4O55187 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.17□□□□□ -0.14
Cbx4O55187 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Asah1-201ENSMUST00000034000 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Otud6b-201ENSMUST00000117268 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Cbx4O55187 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Cbx4O55187 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC14.17□□□□□ -0.14
Cbx4O55187 Ptprs-202ENSMUST00000086828 5608 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Cbx4O55187 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
Cbx4O55187 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Cbx4O55187 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.16□□□□□ -0.14
Cbx4O55187 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms