Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Ctps-201ENSMUST00000030381 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Gm19863-201ENSMUST00000192480 2218 ntBASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Casz1-202ENSMUST00000122222 7926 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Apbb1-213ENSMUST00000189265 1429 ntTSL 5 BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Col28a1Q2UY11 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Col28a1Q2UY11 Arhgef25-202ENSMUST00000167353 2189 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
Col28a1Q2UY11 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Hic2-201ENSMUST00000090190 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm10499-201ENSMUST00000174094 934 ntBASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 AC154621.1-201ENSMUST00000226155 1119 ntBASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Dab1-203ENSMUST00000106830 5278 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Gm37691-201ENSMUST00000192147 2573 ntBASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Col4a1-201ENSMUST00000033898 6615 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Col28a1Q2UY11 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Aldh1b1-201ENSMUST00000044384 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Stk33-202ENSMUST00000106745 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Nup62-203ENSMUST00000207103 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Tmc8-201ENSMUST00000050874 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Itga8-201ENSMUST00000028106 5812 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm23935-201ENSMUST00000102303 57 ntBASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm24270-201ENSMUST00000102326 57 ntBASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm14494-201ENSMUST00000118786 435 ntBASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm24245-201ENSMUST00000157318 57 ntBASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm2756-201ENSMUST00000195851 400 ntBASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Rasal3-207ENSMUST00000137458 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Ccdc85a-201ENSMUST00000042534 5332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Hoxc4-201ENSMUST00000100164 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Col28a1Q2UY11 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Col28a1Q2UY11 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms