Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 AC142381.1-201ENST00000426099 345 ntBASIC10.69□□□□□ -0.7
HSPG2P98160 AL512638.1-201ENST00000457493 794 ntBASIC10.69□□□□□ -0.7
HSPG2P98160 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 AL583810.1-201ENST00000553344 1045 ntBASIC10.69□□□□□ -0.7
HSPG2P98160 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC10.69□□□□□ -0.7
HSPG2P98160 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC10.69□□□□□ -0.7
HSPG2P98160 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC10.69□□□□□ -0.7
HSPG2P98160 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
HSPG2P98160 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 AL355994.2-201ENST00000447882 704 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 STK19B-204ENST00000512515 211 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 CD74-212ENST00000524315 584 ntTSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
HSPG2P98160 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC10.68□□□□□ -0.7
HSPG2P98160 MIR6869-201ENST00000619434 62 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
HSPG2P98160 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TUBB1P2-201ENST00000422712 1306 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 TUBB1P1-201ENST00000503144 1300 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 MIR1908-201ENST00000410394 80 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC10.68□□□□□ -0.7
HSPG2P98160 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC10.68□□□□□ -0.7
HSPG2P98160 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC10.68□□□□□ -0.7
HSPG2P98160 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC10.68□□□□□ -0.7
HSPG2P98160 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
HSPG2P98160 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC10.68□□□□□ -0.7
HSPG2P98160 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC10.68□□□□□ -0.7
HSPG2P98160 AL512343.1-201ENST00000605837 169 ntBASIC10.68□□□□□ -0.7
HSPG2P98160 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 AFG3L1P-217ENST00000557444 2447 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC10.67□□□□□ -0.7
HSPG2P98160 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC10.67□□□□□ -0.7
HSPG2P98160 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 AC008738.7-201ENST00000609744 511 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC10.67□□□□□ -0.7
HSPG2P98160 AL645728.2-201ENST00000641974 660 ntBASIC10.67□□□□□ -0.7
HSPG2P98160 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
HSPG2P98160 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms