Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Hrh3-205ENSMUST00000165762 1368 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pif1Q80SX8 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Pif1Q80SX8 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Gm45102-201ENSMUST00000207427 857 ntBASIC20.37■□□□□ 0.85
Pif1Q80SX8 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Pif1Q80SX8 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Gm14117-201ENSMUST00000122417 843 ntBASIC20.36■□□□□ 0.85
Pif1Q80SX8 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC20.36■□□□□ 0.85
Pif1Q80SX8 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Pigv-202ENSMUST00000067902 990 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Pif1Q80SX8 Gm18755-201ENSMUST00000218030 1099 ntBASIC20.34■□□□□ 0.85
Pif1Q80SX8 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pif1Q80SX8 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Pif1Q80SX8 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Pif1Q80SX8 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pif1Q80SX8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pif1Q80SX8 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Pif1Q80SX8 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC20.33■□□□□ 0.85
Pif1Q80SX8 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Pif1Q80SX8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
Pif1Q80SX8 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pif1Q80SX8 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Pif1Q80SX8 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pif1Q80SX8 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pif1Q80SX8 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Pif1Q80SX8 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Pif1Q80SX8 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pif1Q80SX8 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pif1Q80SX8 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Pif1Q80SX8 Gm9959-201ENSMUST00000068277 390 ntBASIC20.3■□□□□ 0.84
Pif1Q80SX8 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Pif1Q80SX8 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Pif1Q80SX8 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC20.3■□□□□ 0.84
Pif1Q80SX8 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Pif1Q80SX8 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pif1Q80SX8 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pif1Q80SX8 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Pif1Q80SX8 Tfpt-204ENSMUST00000155592 1091 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pif1Q80SX8 AC164433.2-201ENSMUST00000226346 1701 ntBASIC20.29■□□□□ 0.84
Pif1Q80SX8 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pif1Q80SX8 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Pif1Q80SX8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Pif1Q80SX8 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Pif1Q80SX8 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Pif1Q80SX8 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Pif1Q80SX8 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Pif1Q80SX8 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
Pif1Q80SX8 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Pif1Q80SX8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC20.26■□□□□ 0.83
Pif1Q80SX8 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC20.25■□□□□ 0.83
Pif1Q80SX8 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Foxb2-201ENSMUST00000072915 1515 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
Pif1Q80SX8 Tmem164-204ENSMUST00000112889 1742 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Pif1Q80SX8 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pif1Q80SX8 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Pif1Q80SX8 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Pif1Q80SX8 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms