Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Limch1Q3UH68 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC25.99■■□□□ 1.75
Limch1Q3UH68 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC25.99■■□□□ 1.75
Limch1Q3UH68 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
Limch1Q3UH68 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC25.99■■□□□ 1.75
Limch1Q3UH68 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC25.99■■□□□ 1.75
Limch1Q3UH68 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
Limch1Q3UH68 Gm9910-201ENSMUST00000195385 1550 ntBASIC25.99■■□□□ 1.75
Limch1Q3UH68 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Limch1Q3UH68 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Limch1Q3UH68 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC25.98■■□□□ 1.75
Limch1Q3UH68 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Tmem221-201ENSMUST00000052072 1604 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Terc-201ENSMUST00000082862 423 ntBASIC25.97■■□□□ 1.75
Limch1Q3UH68 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Limch1Q3UH68 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Limch1Q3UH68 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC25.96■■□□□ 1.75
Limch1Q3UH68 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Limch1Q3UH68 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
Limch1Q3UH68 Gm21989-201ENSMUST00000174530 1609 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Limch1Q3UH68 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Limch1Q3UH68 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC25.95■■□□□ 1.74
Limch1Q3UH68 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Limch1Q3UH68 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Srd5a3-201ENSMUST00000031143 1747 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Oaz2-206ENSMUST00000153700 1843 ntAPPRIS P2 TSL 5 BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Limch1Q3UH68 Emid1-208ENSMUST00000163299 1923 ntAPPRIS ALT2 TSL 5 BASIC25.92■■□□□ 1.74
Limch1Q3UH68 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Limch1Q3UH68 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC25.92■■□□□ 1.74
Limch1Q3UH68 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
Limch1Q3UH68 Htra1-201ENSMUST00000006367 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Limch1Q3UH68 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Limch1Q3UH68 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Gm6934-201ENSMUST00000194780 1905 ntBASIC25.89■■□□□ 1.74
Limch1Q3UH68 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC25.89■■□□□ 1.74
Limch1Q3UH68 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Limch1Q3UH68 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC25.87■■□□□ 1.73
Limch1Q3UH68 Zgpat-202ENSMUST00000108807 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Limch1Q3UH68 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Limch1Q3UH68 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Limch1Q3UH68 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
Limch1Q3UH68 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Limch1Q3UH68 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Limch1Q3UH68 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Limch1Q3UH68 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Limch1Q3UH68 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC25.85■■□□□ 1.73
Limch1Q3UH68 AC151971.4-201ENSMUST00000214717 704 ntBASIC25.85■■□□□ 1.73
Limch1Q3UH68 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
Limch1Q3UH68 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Limch1Q3UH68 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC25.85■■□□□ 1.73
Limch1Q3UH68 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC25.84■■□□□ 1.73
Limch1Q3UH68 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC25.84■■□□□ 1.73
Limch1Q3UH68 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC25.84■■□□□ 1.73
Limch1Q3UH68 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Limch1Q3UH68 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC25.83■■□□□ 1.73
Limch1Q3UH68 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
Limch1Q3UH68 4933440N22Rik-202ENSMUST00000204444 1952 ntBASIC25.83■■□□□ 1.73
Limch1Q3UH68 Gm5067-201ENSMUST00000170449 1009 ntBASIC25.82■■□□□ 1.72
Limch1Q3UH68 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Limch1Q3UH68 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Limch1Q3UH68 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Limch1Q3UH68 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Limch1Q3UH68 Pdp1-201ENSMUST00000056050 1881 ntAPPRIS P3 TSL 5 BASIC25.81■■□□□ 1.72
Limch1Q3UH68 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Limch1Q3UH68 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Limch1Q3UH68 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Limch1Q3UH68 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Limch1Q3UH68 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Limch1Q3UH68 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Limch1Q3UH68 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Limch1Q3UH68 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC25.79■■□□□ 1.72
Limch1Q3UH68 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Limch1Q3UH68 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Limch1Q3UH68 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC25.79■■□□□ 1.72
Limch1Q3UH68 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC25.78■■□□□ 1.72
Limch1Q3UH68 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
Limch1Q3UH68 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC25.78■■□□□ 1.72
Limch1Q3UH68 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Limch1Q3UH68 Cdkn1c-202ENSMUST00000167912 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Limch1Q3UH68 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC25.77■■□□□ 1.72
Limch1Q3UH68 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
Limch1Q3UH68 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms