Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Sox3P53784 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox3P53784 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox3P53784 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox3P53784 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
Sox3P53784 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Sox3P53784 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sox3P53784 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
Sox3P53784 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Sox3P53784 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC21■□□□□ 0.95
Sox3P53784 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Sox3P53784 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Sox3P53784 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
Sox3P53784 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
Sox3P53784 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Sox3P53784 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox3P53784 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox3P53784 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Sox3P53784 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.98■□□□□ 0.95
Sox3P53784 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox3P53784 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Sox3P53784 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Sox3P53784 H3f3aos-201ENSMUST00000097448 2905 ntBASIC20.98■□□□□ 0.95
Sox3P53784 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sox3P53784 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sox3P53784 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.97■□□□□ 0.95
Sox3P53784 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Sox3P53784 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Sox3P53784 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Sox3P53784 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Sox3P53784 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC20.96■□□□□ 0.95
Sox3P53784 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC20.96■□□□□ 0.95
Sox3P53784 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.96■□□□□ 0.95
Sox3P53784 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC20.96■□□□□ 0.95
Sox3P53784 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.96■□□□□ 0.95
Sox3P53784 Gm9959-201ENSMUST00000068277 390 ntBASIC20.96■□□□□ 0.95
Sox3P53784 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox3P53784 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox3P53784 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Sox3P53784 Hccs-201ENSMUST00000033717 2320 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Cdc42ep5-201ENSMUST00000076831 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Sox3P53784 Tmem150a-202ENSMUST00000132243 1478 ntTSL 5 BASIC20.94■□□□□ 0.94
Sox3P53784 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox3P53784 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
Sox3P53784 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Sox3P53784 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox3P53784 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Sox3P53784 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox3P53784 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Sox3P53784 Gm45444-201ENSMUST00000211394 898 ntBASIC20.93■□□□□ 0.94
Sox3P53784 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.92■□□□□ 0.94
Sox3P53784 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.92■□□□□ 0.94
Sox3P53784 Rpl34-201ENSMUST00000062601 624 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Terc-201ENSMUST00000082862 423 ntBASIC20.92■□□□□ 0.94
Sox3P53784 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Sox3P53784 Tmem238-201ENSMUST00000168578 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Sox3P53784 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Sox3P53784 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC20.91■□□□□ 0.94
Sox3P53784 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Sox3P53784 Serp2-204ENSMUST00000228055 705 ntBASIC20.91■□□□□ 0.94
Sox3P53784 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Sox3P53784 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Sox3P53784 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.9■□□□□ 0.94
Sox3P53784 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox3P53784 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.9■□□□□ 0.94
Sox3P53784 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Sox3P53784 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Sox3P53784 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Sox3P53784 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Sox3P53784 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Sox3P53784 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.89■□□□□ 0.93
Sox3P53784 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Sox3P53784 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Sox3P53784 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Sox3P53784 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sox3P53784 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC20.87■□□□□ 0.93
Sox3P53784 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Sox3P53784 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Sox3P53784 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC20.87■□□□□ 0.93
Sox3P53784 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sox3P53784 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Sox3P53784 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms