Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 AC164433.2-201ENSMUST00000226346 1701 ntBASIC23.89■■□□□ 1.41
Chmp6P0C0A3 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
Chmp6P0C0A3 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
Chmp6P0C0A3 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Gm12366-201ENSMUST00000121722 873 ntBASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Gm44428-201ENSMUST00000204474 874 ntBASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Gm5786-201ENSMUST00000085368 882 ntBASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
Chmp6P0C0A3 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
Chmp6P0C0A3 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
Chmp6P0C0A3 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC23.86■■□□□ 1.41
Chmp6P0C0A3 Prr5-202ENSMUST00000171460 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp6P0C0A3 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp6P0C0A3 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp6P0C0A3 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Chmp6P0C0A3 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
Chmp6P0C0A3 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp6P0C0A3 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp6P0C0A3 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp6P0C0A3 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp6P0C0A3 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
Chmp6P0C0A3 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Chmp6P0C0A3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
Chmp6P0C0A3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Chmp6P0C0A3 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Gm42699-201ENSMUST00000198104 1657 ntBASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Gm14523-201ENSMUST00000117260 558 ntBASIC23.81■■□□□ 1.4
Chmp6P0C0A3 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC23.81■■□□□ 1.4
Chmp6P0C0A3 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC23.8■■□□□ 1.4
Chmp6P0C0A3 Gm7332-201ENSMUST00000118351 454 ntBASIC23.8■■□□□ 1.4
Chmp6P0C0A3 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC23.8■■□□□ 1.4
Chmp6P0C0A3 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp6P0C0A3 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Chmp6P0C0A3 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Slc16a11-207ENSMUST00000136328 1403 ntTSL 5 BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Chmp6P0C0A3 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC23.78■■□□□ 1.4
Chmp6P0C0A3 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC23.78■■□□□ 1.4
Chmp6P0C0A3 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Chmp6P0C0A3 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp6P0C0A3 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC23.77■■□□□ 1.4
Chmp6P0C0A3 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Chmp6P0C0A3 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
Chmp6P0C0A3 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Chmp6P0C0A3 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
Chmp6P0C0A3 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp6P0C0A3 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC23.74■■□□□ 1.39
Chmp6P0C0A3 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp6P0C0A3 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp6P0C0A3 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
Chmp6P0C0A3 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
Chmp6P0C0A3 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
Chmp6P0C0A3 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
Chmp6P0C0A3 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC23.72■■□□□ 1.39
Chmp6P0C0A3 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 363.6 ms