Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Mageh1-201ENSMUST00000051484 1410 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
Vps53Q8CCB4 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Mir449b-201ENSMUST00000104833 80 ntBASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Rpph1-201ENSMUST00000175096 319 ntBASIC16.94■□□□□ 0.3
Vps53Q8CCB4 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Rad18-201ENSMUST00000068487 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps53Q8CCB4 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Sgsm1-201ENSMUST00000048112 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 S100pbp-204ENSMUST00000106061 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Arhgap28-201ENSMUST00000024840 5322 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Brwd3-202ENSMUST00000101283 1066 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Gm12008-201ENSMUST00000117791 755 ntBASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Rnf138rt1-201ENSMUST00000059320 1191 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Clip2-201ENSMUST00000036999 4893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Slc22a15-201ENSMUST00000106928 6573 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Vps53Q8CCB4 Yap1-201ENSMUST00000065353 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Gm37736-201ENSMUST00000193564 2802 ntBASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Creg2-201ENSMUST00000053355 6091 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 C530008M17Rik-204ENSMUST00000121160 6921 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Gm22175-201ENSMUST00000175007 78 ntBASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Gm27430-201ENSMUST00000184585 107 ntBASIC16.92■□□□□ 0.3
Vps53Q8CCB4 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Gm44333-201ENSMUST00000197168 107 ntBASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 2610318N02Rik-201ENSMUST00000093336 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Pard6a-202ENSMUST00000098444 1273 ntTSL 2 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Acin1-224ENSMUST00000167015 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Dagla-201ENSMUST00000039327 5634 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps53Q8CCB4 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps53Q8CCB4 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Vps53Q8CCB4 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms