Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Camk2b-208ENSMUST00000109812 1875 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Trim28Q62318 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC18.81■□□□□ 0.6
Trim28Q62318 Ddb2-201ENSMUST00000028696 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim28Q62318 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
Trim28Q62318 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 A530058N18Rik-202ENSMUST00000134129 411 ntTSL 3 BASIC18.8■□□□□ 0.6
Trim28Q62318 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 2900092O11Rik-201ENSMUST00000191770 755 ntBASIC18.8■□□□□ 0.6
Trim28Q62318 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Oxt-201ENSMUST00000028764 537 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Tmem219-201ENSMUST00000032926 941 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Rxra-203ENSMUST00000113934 1989 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Gm9109-201ENSMUST00000120254 1405 ntBASIC18.8■□□□□ 0.6
Trim28Q62318 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Plekhb1-206ENSMUST00000107047 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Tmem101-201ENSMUST00000021296 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Trim28Q62318 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim28Q62318 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Fam217a-204ENSMUST00000225242 1811 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Trim28Q62318 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Cfap99-201ENSMUST00000207754 2123 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Trim28Q62318 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Nr1d1-201ENSMUST00000064941 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 B230359F08Rik-201ENSMUST00000103671 426 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim28Q62318 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Cenpa-206ENSMUST00000149759 346 ntTSL 3 BASIC18.79■□□□□ 0.6
Trim28Q62318 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC18.79■□□□□ 0.6
Trim28Q62318 Gm21470-201ENSMUST00000187680 696 ntBASIC18.79■□□□□ 0.6
Trim28Q62318 Gm31326-201ENSMUST00000191856 1048 ntBASIC18.79■□□□□ 0.6
Trim28Q62318 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Ighv8-14-201ENSMUST00000196781 358 ntBASIC18.79■□□□□ 0.6
Trim28Q62318 AC139350.3-201ENSMUST00000226151 420 ntBASIC18.79■□□□□ 0.6
Trim28Q62318 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Fthl17c-201ENSMUST00000075792 850 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Trim28Q62318 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
Trim28Q62318 Zfp296-201ENSMUST00000108453 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Trim28Q62318 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Tbc1d10c-201ENSMUST00000045864 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Trim28Q62318 Gm11960-202ENSMUST00000181063 2858 ntBASIC18.78■□□□□ 0.6
Trim28Q62318 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
Trim28Q62318 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC18.78■□□□□ 0.6
Trim28Q62318 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 1700121C08Rik-201ENSMUST00000137546 677 ntTSL 3 BASIC18.78■□□□□ 0.6
Trim28Q62318 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Trim28Q62318 AC140375.2-201ENSMUST00000225283 584 ntBASIC18.78■□□□□ 0.6
Trim28Q62318 Tpd52-201ENSMUST00000063496 697 ntTSL 2 BASIC18.78■□□□□ 0.6
Trim28Q62318 Rrp1-201ENSMUST00000062678 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Fer-202ENSMUST00000038080 2365 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC18.78■□□□□ 0.6
Trim28Q62318 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Tdrp-201ENSMUST00000062613 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Paf1-201ENSMUST00000003529 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Trim28Q62318 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Fbxl12-205ENSMUST00000140702 1555 ntBASIC18.77■□□□□ 0.6
Trim28Q62318 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Gm37305-201ENSMUST00000195714 4279 ntBASIC18.77■□□□□ 0.6
Trim28Q62318 Ecsit-201ENSMUST00000098937 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Pitpna-206ENSMUST00000179521 3727 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
Trim28Q62318 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Trim28Q62318 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC18.77■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms