Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC11.79□□□□□ -0.52
Cdx1P18111 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Cmtm3-201ENSMUST00000034343 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Gm45779-201ENSMUST00000212189 4064 ntBASIC11.79□□□□□ -0.52
Cdx1P18111 Zbtb5-202ENSMUST00000107817 3867 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Zfp777-201ENSMUST00000095944 3184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Timm23-201ENSMUST00000013845 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Cdx1P18111 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC11.79□□□□□ -0.52
Cdx1P18111 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC11.79□□□□□ -0.52
Cdx1P18111 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
Cdx1P18111 Gm2651-201ENSMUST00000203560 838 ntBASIC11.79□□□□□ -0.52
Cdx1P18111 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Col1a2-201ENSMUST00000031668 5348 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Tpm1-202ENSMUST00000034928 1824 ntTSL 5 BASIC11.79□□□□□ -0.52
Cdx1P18111 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Pcdha12-201ENSMUST00000047614 5335 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Inpp5a-202ENSMUST00000097975 2301 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Ell-201ENSMUST00000093454 3072 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Plagl1-202ENSMUST00000121646 5260 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Ncbp1-201ENSMUST00000030014 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Arhgef17-201ENSMUST00000107032 10190 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Gm12008-201ENSMUST00000117791 755 ntBASIC11.78□□□□□ -0.52
Cdx1P18111 Gm7862-201ENSMUST00000121461 292 ntBASIC11.78□□□□□ -0.52
Cdx1P18111 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdx1P18111 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdx1P18111 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC11.78□□□□□ -0.52
Cdx1P18111 Gm18206-201ENSMUST00000207027 926 ntBASIC11.78□□□□□ -0.52
Cdx1P18111 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC11.78□□□□□ -0.52
Cdx1P18111 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Ccser2-202ENSMUST00000090024 7509 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Six3os1-211ENSMUST00000176958 2889 ntTSL 2 BASIC11.78□□□□□ -0.52
Cdx1P18111 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Rbmx-202ENSMUST00000114726 2108 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Bmp3-202ENSMUST00000197143 2739 ntTSL 2 BASIC11.78□□□□□ -0.52
Cdx1P18111 Dnmt3b-209ENSMUST00000109773 4148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Cdx1P18111 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Azi2-201ENSMUST00000044454 3396 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Cdx1P18111 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Phka1-204ENSMUST00000119229 6025 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
Cdx1P18111 Sox11-201ENSMUST00000079063 8311 ntAPPRIS P1 BASIC11.77□□□□□ -0.52
Cdx1P18111 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC11.77□□□□□ -0.52
Cdx1P18111 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.52
Cdx1P18111 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Cdx1P18111 Gm20632-201ENSMUST00000176760 2427 ntBASIC11.77□□□□□ -0.52
Cdx1P18111 Efemp2-204ENSMUST00000165485 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC11.77□□□□□ -0.53
Cdx1P18111 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Cdx1P18111 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC11.77□□□□□ -0.53
Cdx1P18111 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC11.77□□□□□ -0.53
Cdx1P18111 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
Cdx1P18111 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Cdx1P18111 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC11.77□□□□□ -0.53
Cdx1P18111 AC160338.1-201ENSMUST00000214232 705 ntBASIC11.77□□□□□ -0.53
Cdx1P18111 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC11.77□□□□□ -0.53
Cdx1P18111 Gm6296-201ENSMUST00000222599 943 ntBASIC11.77□□□□□ -0.53
Cdx1P18111 Cmtm5-203ENSMUST00000227441 610 ntBASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms