Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim11Q99PQ2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim11Q99PQ2 Gm14451-201ENSMUST00000121581 1542 ntBASIC16.65■□□□□ 0.26
Trim11Q99PQ2 Sass6-205ENSMUST00000198311 2404 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Trim11Q99PQ2 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim11Q99PQ2 Ythdf3-203ENSMUST00000191774 3196 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Trim11Q99PQ2 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Cdk8-205ENSMUST00000161181 2467 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Ctnnd2-203ENSMUST00000226119 4111 ntAPPRIS ALT2 BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.26
Trim11Q99PQ2 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Ptp4a3-201ENSMUST00000053232 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 AC126250.1-201ENSMUST00000228343 1768 ntBASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Zfp318-204ENSMUST00000138127 3936 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Gm32591-204ENSMUST00000208679 1806 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Gm28308-201ENSMUST00000128102 752 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Olfr286-202ENSMUST00000205305 969 ntBASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 AC164565.1-201ENSMUST00000217520 1484 ntBASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Gm17396-201ENSMUST00000172075 1655 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Anks1b-213ENSMUST00000182284 2607 ntTSL 5 BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Trim11Q99PQ2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Gpsm1-203ENSMUST00000078616 3127 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Tex44-201ENSMUST00000046004 1724 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Gm27301-201ENSMUST00000184012 127 ntBASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Tspan18-201ENSMUST00000028646 1203 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Cox16-201ENSMUST00000002757 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Ppp1r3g-201ENSMUST00000132661 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Trim11Q99PQ2 Gm13410-201ENSMUST00000117058 1415 ntBASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Sorbs3-204ENSMUST00000227929 2460 ntBASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Ece2-204ENSMUST00000133344 3042 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Ntng2-201ENSMUST00000048455 1770 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 A930004D18Rik-201ENSMUST00000066163 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Gm13233-201ENSMUST00000118760 1443 ntBASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Gm13244-201ENSMUST00000118855 1446 ntBASIC16.62■□□□□ 0.25
Trim11Q99PQ2 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 9330020H09Rik-201ENSMUST00000163781 2147 ntTSL 2 BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Ralbp1-201ENSMUST00000024905 3765 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trim11Q99PQ2 Krt42-201ENSMUST00000017270 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms