Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Tbx3-202ENSMUST00000079719 4982 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 Tap1-206ENSMUST00000170086 2953 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.93■□□□□ 0.46
Trim27Q62158 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 4930556H04Rik-201ENSMUST00000222451 1675 ntBASIC17.93■□□□□ 0.46
Trim27Q62158 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trim27Q62158 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trim27Q62158 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Tmc8-202ENSMUST00000106334 2644 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Pcp2-202ENSMUST00000128566 1447 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
Trim27Q62158 Gm11543-201ENSMUST00000120758 370 ntBASIC17.92■□□□□ 0.46
Trim27Q62158 Gm12017-201ENSMUST00000122453 1003 ntBASIC17.92■□□□□ 0.46
Trim27Q62158 Tmem217-202ENSMUST00000168339 812 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC17.92■□□□□ 0.46
Trim27Q62158 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trim27Q62158 Lsmem1-201ENSMUST00000095760 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Cradd-201ENSMUST00000053594 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Dyrk3-201ENSMUST00000016670 3164 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Clptm1-201ENSMUST00000055242 4143 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trim27Q62158 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim27Q62158 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim27Q62158 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Nudt18-203ENSMUST00000228768 1578 ntBASIC17.91■□□□□ 0.46
Trim27Q62158 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Casp8ap2-201ENSMUST00000029950 6799 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Olfr1156-203ENSMUST00000216726 3271 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Krit1-211ENSMUST00000200386 2343 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC17.91■□□□□ 0.46
Trim27Q62158 Gm2810-201ENSMUST00000118681 990 ntBASIC17.91■□□□□ 0.46
Trim27Q62158 Med28-202ENSMUST00000118833 734 ntTSL 2 BASIC17.91■□□□□ 0.46
Trim27Q62158 Gm13365-201ENSMUST00000121188 973 ntBASIC17.91■□□□□ 0.46
Trim27Q62158 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Tcf4-248ENSMUST00000202354 2120 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Tcf4-257ENSMUST00000202772 2125 ntTSL 5 BASIC17.91■□□□□ 0.46
Trim27Q62158 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Trim27Q62158 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Gm45630-201ENSMUST00000210243 1911 ntBASIC17.91■□□□□ 0.46
Trim27Q62158 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Trim27Q62158 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim27Q62158 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Nfatc4-204ENSMUST00000226357 2680 ntAPPRIS ALT2 BASIC17.9■□□□□ 0.46
Trim27Q62158 Zpbp2-201ENSMUST00000017339 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Gm14812-201ENSMUST00000156494 1794 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC17.9■□□□□ 0.46
Trim27Q62158 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim27Q62158 Gm27494-201ENSMUST00000184735 189 ntBASIC17.9■□□□□ 0.46
Trim27Q62158 Slc12a5-208ENSMUST00000202479 1202 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim27Q62158 Lyzl6-201ENSMUST00000021328 900 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 AC225888.1-201ENSMUST00000227184 728 ntBASIC17.9■□□□□ 0.46
Trim27Q62158 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Tmod4-201ENSMUST00000005769 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Kcng1-201ENSMUST00000099069 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Rpa2-201ENSMUST00000102561 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim27Q62158 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim27Q62158 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 AC167013.2-201ENSMUST00000228520 2684 ntBASIC17.9■□□□□ 0.46
Trim27Q62158 Gnpda2-201ENSMUST00000031117 1894 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Gm6756-201ENSMUST00000180647 1620 ntBASIC17.9■□□□□ 0.46
Trim27Q62158 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim27Q62158 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim27Q62158 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
Trim27Q62158 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms