Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Ext1-201ENSMUST00000077273 7663 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC11.82□□□□□ -0.52
Cdx1P18111 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 Mamstr-201ENSMUST00000148532 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Cdx1P18111 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC11.82□□□□□ -0.52
Cdx1P18111 Gnas-204ENSMUST00000087877 3947 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Nov-201ENSMUST00000050027 2869 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Slc20a2-201ENSMUST00000067786 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Ascc3-201ENSMUST00000035606 7760 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdx1P18111 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdx1P18111 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Cdx1P18111 Slc39a3-202ENSMUST00000117276 3796 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Ociad2-205ENSMUST00000201908 2378 ntTSL 2 BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm15165-201ENSMUST00000118140 502 ntBASIC11.81□□□□□ -0.52
Cdx1P18111 Nrn1l-202ENSMUST00000118920 603 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm13830-205ENSMUST00000201195 1155 ntBASIC11.81□□□□□ -0.52
Cdx1P18111 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm6376-201ENSMUST00000209407 580 ntBASIC11.81□□□□□ -0.52
Cdx1P18111 Cenpp-201ENSMUST00000021818 1144 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm5867-201ENSMUST00000063197 592 ntBASIC11.81□□□□□ -0.52
Cdx1P18111 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Morc4-202ENSMUST00000087401 3862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Dnase1l1-201ENSMUST00000019232 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Dlst-201ENSMUST00000053811 2764 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Vps72-201ENSMUST00000009102 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Usf1-208ENSMUST00000161241 2167 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Cdx1P18111 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm5422-201ENSMUST00000050717 2721 ntBASIC11.8□□□□□ -0.52
Cdx1P18111 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC11.8□□□□□ -0.52
Cdx1P18111 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm10457-201ENSMUST00000222619 1906 ntTSL 2 BASIC11.8□□□□□ -0.52
Cdx1P18111 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC11.8□□□□□ -0.52
Cdx1P18111 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Ist1-201ENSMUST00000034164 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm42872-201ENSMUST00000200026 1967 ntBASIC11.8□□□□□ -0.52
Cdx1P18111 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm14780-201ENSMUST00000118387 2737 ntBASIC11.8□□□□□ -0.52
Cdx1P18111 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
Cdx1P18111 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 2410004I01Rik-201ENSMUST00000138424 1187 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC11.8□□□□□ -0.52
Cdx1P18111 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC11.8□□□□□ -0.52
Cdx1P18111 Tac4-201ENSMUST00000021242 1251 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Cdx1P18111 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC11.8□□□□□ -0.52
Cdx1P18111 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Cdx1P18111 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 AC117194.1-201ENSMUST00000224847 3002 ntBASIC11.8□□□□□ -0.52
Cdx1P18111 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Proser2-202ENSMUST00000114942 4398 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Slc4a1ap-213ENSMUST00000202950 2499 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Cdx1P18111 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Catsper4-204ENSMUST00000169381 1506 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm13288-201ENSMUST00000094977 2850 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Cdx1P18111 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Eml3-201ENSMUST00000096241 3322 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Cdx1P18111 Gm18244-201ENSMUST00000219747 1566 ntBASIC11.79□□□□□ -0.52
Cdx1P18111 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Tm9sf1-201ENSMUST00000002391 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Smc6-208ENSMUST00000218866 3373 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Cdx1P18111 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms