Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Chtop-206ENSMUST00000107344 2972 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.11□□□□□ -0.47
Hmgb3O54879 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Fam159b-201ENSMUST00000043061 1310 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Epha8-201ENSMUST00000030420 4713 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Hmgb3O54879 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Ankrd6-202ENSMUST00000084748 4354 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Gm7286-201ENSMUST00000182691 1007 ntBASIC12.1□□□□□ -0.47
Hmgb3O54879 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Fam76a-201ENSMUST00000030696 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC12.1□□□□□ -0.47
Hmgb3O54879 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Hmgb3O54879 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Hpca-203ENSMUST00000116442 1568 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Enox1-201ENSMUST00000022589 3142 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Barhl2-201ENSMUST00000086795 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Sipa1-204ENSMUST00000169854 3583 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Cacna1b-205ENSMUST00000114447 6987 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC12.09□□□□□ -0.47
Hmgb3O54879 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Atp9b-213ENSMUST00000225980 5150 ntAPPRIS P2 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC12.09□□□□□ -0.47
Hmgb3O54879 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Hmgb3O54879 AC140354.1-201ENSMUST00000219499 2425 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Lysmd3-201ENSMUST00000049055 2338 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Hmgb3O54879 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Hmgb3O54879 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Hmgb3O54879 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC12.08□□□□□ -0.48
Hmgb3O54879 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Gk5-202ENSMUST00000122383 4455 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Sh3bp5-201ENSMUST00000091903 2684 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC12.08□□□□□ -0.48
Hmgb3O54879 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Hmgb3O54879 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms