Protein–RNA interactions for Protein: Q6P1Y1

Rtl3, Retrotransposon Gag-like protein 3, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rtl3Q6P1Y1 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.13■□□□□ 0.01
Rtl3Q6P1Y1 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Pcolce2-201ENSMUST00000015498 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Camk2g-217ENSMUST00000226630 1937 ntBASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Gm27321-201ENSMUST00000185021 205 ntBASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 1700086L19Rik-202ENSMUST00000185822 1028 ntTSL 3 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Sec61a2-209ENSMUST00000193792 2110 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Gm20949-201ENSMUST00000206478 952 ntBASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Gm5089-201ENSMUST00000081580 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Zbtb14-201ENSMUST00000062369 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Rtl3Q6P1Y1 Egfl7-212ENSMUST00000166920 1391 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Mbl1-202ENSMUST00000225792 1563 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Gm8749-201ENSMUST00000117737 331 ntBASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 CT025626.1-201ENSMUST00000223735 1455 ntBASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Nabp1-201ENSMUST00000027279 2838 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
Rtl3Q6P1Y1 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 BC026585-201ENSMUST00000046743 1618 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm45605-201ENSMUST00000210265 4269 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Col7a1-202ENSMUST00000112070 9250 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Pcdha4-202ENSMUST00000192512 5363 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Pcyt1a-202ENSMUST00000104893 4951 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm2810-201ENSMUST00000118681 990 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm25948-201ENSMUST00000175334 112 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm9726-201ENSMUST00000180321 678 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm6944-201ENSMUST00000182449 1006 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Olfr324-201ENSMUST00000054683 1122 ntAPPRIS P2 BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Fgf17-202ENSMUST00000227123 1336 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Agap1-201ENSMUST00000027521 11921 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Gm13127-201ENSMUST00000118978 1389 ntBASIC15.1■□□□□ 0.01
Rtl3Q6P1Y1 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Rtl3Q6P1Y1 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 53.1 ms