Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Dnajc27-201ENSMUST00000020986 4698 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Lire1P11260 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Lire1P11260 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Lire1P11260 Gm44729-201ENSMUST00000206759 2052 ntBASIC13.91□□□□□ -0.18
Lire1P11260 Rxrg-202ENSMUST00000111380 1630 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Ate1-203ENSMUST00000094017 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC13.9□□□□□ -0.18
Lire1P11260 Yipf6-201ENSMUST00000054697 5211 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Rnf11-201ENSMUST00000030284 4061 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Tgif2-202ENSMUST00000081335 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Cnn2-202ENSMUST00000105374 926 ntTSL 5 BASIC13.9□□□□□ -0.18
Lire1P11260 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
Lire1P11260 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC13.9□□□□□ -0.18
Lire1P11260 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Lire1P11260 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC13.9□□□□□ -0.18
Lire1P11260 Gm20680-201ENSMUST00000176881 789 ntTSL 5 BASIC13.9□□□□□ -0.18
Lire1P11260 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 2010107E04Rik-203ENSMUST00000222874 612 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Lire1P11260 Prdx4-201ENSMUST00000026328 990 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Slc38a1-201ENSMUST00000088452 7266 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC13.9□□□□□ -0.18
Lire1P11260 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Gm37105-201ENSMUST00000192251 2085 ntBASIC13.9□□□□□ -0.18
Lire1P11260 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC13.9□□□□□ -0.18
Lire1P11260 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Lire1P11260 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.9□□□□□ -0.18
Lire1P11260 Elavl3-203ENSMUST00000215901 3037 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Lire1P11260 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Lire1P11260 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lire1P11260 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Lire1P11260 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Lire1P11260 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
Lire1P11260 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Lire1P11260 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
Lire1P11260 Mir6404-201ENSMUST00000183699 94 ntBASIC13.89□□□□□ -0.19
Lire1P11260 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC13.89□□□□□ -0.19
Lire1P11260 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Lire1P11260 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC13.89□□□□□ -0.19
Lire1P11260 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Mast2-201ENSMUST00000003908 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Lire1P11260 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Lire1P11260 Arrdc1-202ENSMUST00000102935 1574 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Map7d1-202ENSMUST00000106132 3195 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
Lire1P11260 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Pcdha1-202ENSMUST00000193839 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC13.88□□□□□ -0.19
Lire1P11260 AC154621.1-201ENSMUST00000226155 1119 ntBASIC13.88□□□□□ -0.19
Lire1P11260 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
Lire1P11260 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Knop1-204ENSMUST00000106550 5524 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Lire1P11260 Rnf123-201ENSMUST00000047746 4722 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
Lire1P11260 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Apbb2-203ENSMUST00000159512 6632 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
Lire1P11260 Twf2-201ENSMUST00000024047 1596 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
Lire1P11260 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Lire1P11260 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
Lire1P11260 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms