Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Tgfa-201ENSMUST00000032066 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Mir1895-201ENSMUST00000122615 79 ntBASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Gm44872-201ENSMUST00000207864 420 ntBASIC16.42■□□□□ 0.22
Smc1aQ9CU62 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Mettl22-201ENSMUST00000046470 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Cpsf6-207ENSMUST00000176686 2200 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Smc1aQ9CU62 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Pycrl-201ENSMUST00000053918 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm14057-201ENSMUST00000120631 482 ntBASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm27494-201ENSMUST00000184735 189 ntBASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Chchd10-201ENSMUST00000058906 939 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Adam23-205ENSMUST00000114107 6110 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Meioc-201ENSMUST00000100378 4573 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Smc1aQ9CU62 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Nrip2-201ENSMUST00000001561 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Fbxl12-205ENSMUST00000140702 1555 ntBASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Gm37171-201ENSMUST00000192636 1185 ntBASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Gm17968-201ENSMUST00000194902 784 ntBASIC16.4■□□□□ 0.22
Smc1aQ9CU62 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Dad1-201ENSMUST00000022781 878 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Gdpd3-201ENSMUST00000032944 1148 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Acaa1b-201ENSMUST00000010795 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Mycbp-201ENSMUST00000030400 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Smc1aQ9CU62 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC16.39■□□□□ 0.22
Smc1aQ9CU62 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.22
Smc1aQ9CU62 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
Smc1aQ9CU62 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Gm13597-201ENSMUST00000121239 375 ntBASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC16.39■□□□□ 0.21
Smc1aQ9CU62 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms