Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Lims2-201ENSMUST00000025254 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Trim9Q8C7M3 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Irx3os-201ENSMUST00000062522 2988 ntTSL 5 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Foxl1-201ENSMUST00000181609 2705 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Prmt7-203ENSMUST00000109297 1094 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Il9r-202ENSMUST00000128311 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm45760-201ENSMUST00000212190 1782 ntBASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm17619-201ENSMUST00000180625 1449 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm38058-201ENSMUST00000194323 4368 ntBASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Slc12a5-201ENSMUST00000099092 6028 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Gm43205-201ENSMUST00000198622 1968 ntBASIC16.17■□□□□ 0.18
Trim9Q8C7M3 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Rasgrp2-208ENSMUST00000113476 2296 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Wac-201ENSMUST00000074919 3070 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Prickle1-201ENSMUST00000048982 4085 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Atf7ip2-202ENSMUST00000100191 889 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Gm5264-201ENSMUST00000190584 848 ntBASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Gm37230-201ENSMUST00000194491 818 ntBASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Gm43332-201ENSMUST00000202511 1044 ntBASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Gm45098-201ENSMUST00000207179 657 ntBASIC16.16■□□□□ 0.18
Trim9Q8C7M3 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Mapk8ip3-203ENSMUST00000115229 5603 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Nupl1-207ENSMUST00000225311 2475 ntBASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 Cc2d1b-201ENSMUST00000030320 3303 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trim9Q8C7M3 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gm6973-201ENSMUST00000117080 721 ntBASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gm17613-201ENSMUST00000138893 669 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Ccnh-202ENSMUST00000163600 1055 ntTSL 5 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gm17271-201ENSMUST00000165535 355 ntBASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Gm9182-201ENSMUST00000217829 639 ntBASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Rasa4-201ENSMUST00000042135 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Id2-202ENSMUST00000221761 1969 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 1110008P14Rik-202ENSMUST00000146423 2618 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trim9Q8C7M3 Epb41l1-204ENSMUST00000103137 6490 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trim9Q8C7M3 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Trim9Q8C7M3 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms