Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Phyhd1-204ENSMUST00000113645 1325 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Gm13332-201ENSMUST00000120451 1398 ntBASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Vps53Q8CCB4 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Fgd6-201ENSMUST00000020208 8044 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Gm9789-201ENSMUST00000062524 397 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Vldlr-207ENSMUST00000167487 7971 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Nup54-201ENSMUST00000038514 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Vps53Q8CCB4 Vsig10-202ENSMUST00000111967 4236 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Vps53Q8CCB4 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Mink1-203ENSMUST00000079244 4829 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Gm10499-201ENSMUST00000174094 934 ntBASIC17.08■□□□□ 0.32
Vps53Q8CCB4 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Gm5186-201ENSMUST00000218781 920 ntBASIC17.08■□□□□ 0.32
Vps53Q8CCB4 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Vps53Q8CCB4 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Cacna1g-209ENSMUST00000107791 8002 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Lpar2-202ENSMUST00000164890 5800 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Gm6226-201ENSMUST00000117765 1146 ntBASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Gm27321-201ENSMUST00000185021 205 ntBASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Gm14780-201ENSMUST00000118387 2737 ntBASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Vps53Q8CCB4 Ltbp4-203ENSMUST00000118583 4726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Vps53Q8CCB4 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms