Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC092474.2-201ENST00000424288 719 ntBASIC29.23■■■□□ 2.27
CUX1P39880 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC29.23■■■□□ 2.27
CUX1P39880 AC079140.1-201ENST00000508039 487 ntBASIC29.23■■■□□ 2.27
CUX1P39880 NAA60-208ENST00000570819 833 ntTSL 2 BASIC29.23■■■□□ 2.27
CUX1P39880 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC29.23■■■□□ 2.27
CUX1P39880 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC29.23■■■□□ 2.27
CUX1P39880 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC29.23■■■□□ 2.27
CUX1P39880 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CUX1P39880 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC29.23■■■□□ 2.27
CUX1P39880 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC29.23■■■□□ 2.27
CUX1P39880 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX1P39880 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC29.22■■■□□ 2.27
CUX1P39880 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX1P39880 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC29.22■■■□□ 2.27
CUX1P39880 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC29.22■■■□□ 2.27
CUX1P39880 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CUX1P39880 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
CUX1P39880 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC29.22■■■□□ 2.27
CUX1P39880 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
CUX1P39880 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC29.22■■■□□ 2.27
CUX1P39880 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC29.22■■■□□ 2.27
CUX1P39880 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
CUX1P39880 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC29.21■■■□□ 2.27
CUX1P39880 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC29.21■■■□□ 2.27
CUX1P39880 SPDYE11-202ENST00000450699 704 ntBASIC29.21■■■□□ 2.27
CUX1P39880 GATB-205ENST00000508611 605 ntTSL 2 BASIC29.21■■■□□ 2.27
CUX1P39880 RBM7-207ENST00000544582 692 ntTSL 3 BASIC29.21■■■□□ 2.27
CUX1P39880 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 SPDYE9P-201ENST00000570642 692 ntBASIC29.21■■■□□ 2.27
CUX1P39880 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 SPDYE10P-202ENST00000612005 668 ntBASIC29.21■■■□□ 2.27
CUX1P39880 SPDYE8P-202ENST00000612377 668 ntBASIC29.21■■■□□ 2.27
CUX1P39880 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC29.21■■■□□ 2.27
CUX1P39880 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC29.21■■■□□ 2.27
CUX1P39880 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC29.21■■■□□ 2.27
CUX1P39880 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
CUX1P39880 AC046185.3-201ENST00000623228 1824 ntBASIC29.21■■■□□ 2.27
CUX1P39880 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CUX1P39880 CNN2P2-201ENST00000443536 909 ntBASIC29.2■■■□□ 2.27
CUX1P39880 CNN2P3-201ENST00000450201 906 ntBASIC29.2■■■□□ 2.27
CUX1P39880 TAF8-206ENST00000472818 719 ntTSL 2 BASIC29.2■■■□□ 2.27
CUX1P39880 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC29.2■■■□□ 2.27
CUX1P39880 AC243562.1-201ENST00000560672 389 ntBASIC29.2■■■□□ 2.27
CUX1P39880 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC29.2■■■□□ 2.27
CUX1P39880 AL136317.3-201ENST00000618497 906 ntBASIC29.2■■■□□ 2.27
CUX1P39880 AF228730.6-201ENST00000641497 218 ntBASIC29.2■■■□□ 2.27
CUX1P39880 AC084121.3-201ENST00000641716 218 ntBASIC29.2■■■□□ 2.27
CUX1P39880 AC105233.6-201ENST00000642093 218 ntBASIC29.2■■■□□ 2.27
CUX1P39880 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
CUX1P39880 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC29.2■■■□□ 2.27
CUX1P39880 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.27
CUX1P39880 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX1P39880 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC29.2■■■□□ 2.26
CUX1P39880 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC29.2■■■□□ 2.26
CUX1P39880 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC29.2■■■□□ 2.26
CUX1P39880 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC29.2■■■□□ 2.26
CUX1P39880 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX1P39880 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC29.2■■■□□ 2.26
CUX1P39880 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC29.2■■■□□ 2.26
CUX1P39880 RN7SL589P-201ENST00000481268 310 ntBASIC29.2■■■□□ 2.26
CUX1P39880 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC29.2■■■□□ 2.26
CUX1P39880 AL512356.2-201ENST00000546955 174 ntBASIC29.2■■■□□ 2.26
CUX1P39880 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC29.2■■■□□ 2.26
CUX1P39880 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC29.19■■■□□ 2.26
CUX1P39880 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC29.19■■■□□ 2.26
CUX1P39880 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC29.19■■■□□ 2.26
CUX1P39880 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 AL020996.1-203ENST00000536896 2307 ntBASIC29.19■■■□□ 2.26
CUX1P39880 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX1P39880 BAD-202ENST00000394531 631 ntTSL 3 BASIC29.19■■■□□ 2.26
CUX1P39880 WRB-204ENST00000398753 699 ntTSL 3 BASIC29.19■■■□□ 2.26
CUX1P39880 AC236430.1-201ENST00000402231 743 ntBASIC29.19■■■□□ 2.26
CUX1P39880 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC29.19■■■□□ 2.26
CUX1P39880 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC29.19■■■□□ 2.26
CUX1P39880 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX1P39880 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX1P39880 AC087641.1-201ENST00000557561 1021 ntBASIC29.19■■■□□ 2.26
CUX1P39880 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX1P39880 HFE2-206ENST00000634927 506 ntTSL 4 BASIC29.19■■■□□ 2.26
CUX1P39880 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC29.19■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms