Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Tpm1-209ENSMUST00000113690 2890 ntTSL 3 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC13.32□□□□□ -0.28
Lmx1bO88609 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Lmx1bO88609 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Gm22175-201ENSMUST00000175007 78 ntBASIC13.32□□□□□ -0.28
Lmx1bO88609 Gm8597-201ENSMUST00000191525 1109 ntBASIC13.32□□□□□ -0.28
Lmx1bO88609 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Ccdc172-201ENSMUST00000069419 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Ppp2r2c-201ENSMUST00000031003 4088 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Cryzl1-201ENSMUST00000073466 1965 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Hmga1-201ENSMUST00000114888 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Gm5049-201ENSMUST00000195878 1590 ntBASIC13.32□□□□□ -0.28
Lmx1bO88609 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Gpr135-201ENSMUST00000050649 3150 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lmx1bO88609 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lmx1bO88609 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Ispd-202ENSMUST00000220519 3122 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Garem2-201ENSMUST00000058045 3865 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Scrt1-201ENSMUST00000096365 4010 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Slc4a7-201ENSMUST00000057015 8132 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Rpl37rt-201ENSMUST00000100847 682 ntTSL 3 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Mettl23-201ENSMUST00000106370 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC13.31□□□□□ -0.28
Lmx1bO88609 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm24158-201ENSMUST00000175263 71 ntBASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC13.31□□□□□ -0.28
Lmx1bO88609 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm5779-201ENSMUST00000218467 910 ntBASIC13.31□□□□□ -0.28
Lmx1bO88609 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Tmem185b-202ENSMUST00000183952 2824 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
Lmx1bO88609 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm8096-201ENSMUST00000209921 1591 ntBASIC13.31□□□□□ -0.28
Lmx1bO88609 Renbp-201ENSMUST00000114379 1318 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Papd7-204ENSMUST00000223344 2118 ntAPPRIS P2 TSL 3 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Lmx1bO88609 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lmx1bO88609 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Tmem33-204ENSMUST00000161369 6164 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Knop1-205ENSMUST00000116280 5382 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Lmx1bO88609 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Nat8f7-201ENSMUST00000160534 1822 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Lmx1bO88609 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Lmx1bO88609 Nsun7-203ENSMUST00000201100 2775 ntAPPRIS P3 TSL 5 BASIC13.3□□□□□ -0.28
Lmx1bO88609 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm22065-201ENSMUST00000103753 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm22066-201ENSMUST00000103761 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm24932-201ENSMUST00000103763 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm24115-201ENSMUST00000103799 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm22190-201ENSMUST00000103827 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm22191-201ENSMUST00000103831 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm24721-201ENSMUST00000103849 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm28018-201ENSMUST00000103869 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm26399-201ENSMUST00000103937 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Ropn1l-201ENSMUST00000110408 957 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm15593-201ENSMUST00000122085 1008 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm25349-201ENSMUST00000177728 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm23616-201ENSMUST00000177797 110 ntBASIC13.3□□□□□ -0.28
Lmx1bO88609 Gm25871-201ENSMUST00000177816 110 ntBASIC13.3□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms