Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Hnrnpa3-202ENSMUST00000111961 1734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Kcnh4-201ENSMUST00000107361 3748 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Col28a1Q2UY11 Ntng1-203ENSMUST00000106570 1386 ntTSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Ssbp2-201ENSMUST00000004094 3957 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Myo1c-201ENSMUST00000069057 4547 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Rnf103-203ENSMUST00000114179 2671 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm8344-201ENSMUST00000119813 856 ntBASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Sirpa-213ENSMUST00000163034 677 ntTSL 3 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm19710-202ENSMUST00000200320 493 ntTSL 3 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Grk6-207ENSMUST00000225925 2769 ntBASIC14.34□□□□□ -0.11
Col28a1Q2UY11 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Ccnj-202ENSMUST00000119316 3763 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Gm45293-201ENSMUST00000209754 1812 ntBASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col28a1Q2UY11 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Slc22a15-207ENSMUST00000190824 3010 ntTSL 5 BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Rnf44-201ENSMUST00000037422 3734 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Col8a2-201ENSMUST00000070132 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC14.33□□□□□ -0.11
Col28a1Q2UY11 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Zfp810-203ENSMUST00000215202 822 ntTSL 3 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Tex13b-201ENSMUST00000044179 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Pls1-201ENSMUST00000093800 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Gpr155-202ENSMUST00000076463 5061 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col28a1Q2UY11 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Gm2213-201ENSMUST00000197485 688 ntBASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Gm44981-201ENSMUST00000205549 1943 ntBASIC14.32□□□□□ -0.12
Col28a1Q2UY11 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms